UHGV-0087622

Genome information

Genome length 27,350 bps

CDS count 35

Completeness 63.49% (medium-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087622
vOTU ID	vOTU-041874
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_181350
BioSample	SAMEA3449153
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.91
Jumbo phage	No

Genome content
Genome length	27,350 bps
GC content	45.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	92.08%
Average CDS length	720.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087622_1	PHROG	phrog_16573	NA	unknown function
UHGV-0087622_1	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-0087622_1	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0087622_1	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0087622_1	Structural annotation	PF10651, NF032891, COG5456	NA	NA
UHGV-0087622_2	PHROG	phrog_372	tail protein	tail
UHGV-0087622_2	UniRef90	UniRef90_A0A1Y4MZW4	Fibronectin type-III domain-containing protein	NA
UHGV-0087622_2	eggNOG-mapper	1308863.U5J9V2_9CAUD	NA	NA
UHGV-0087622_2	Pfam	PF05895	NA	DUF859
UHGV-0087622_2	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-0087622_3	PHROG	phrog_6616	tail protein	tail
UHGV-0087622_3	UniRef90	UniRef90_A0A414EG21	Tail fiber domain-containing protein	NA
UHGV-0087622_3	eggNOG-mapper	445971.ANASTE_00088	NA	NA
UHGV-0087622_3	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0087622_4	PHROG	phrog_1194	NA	unknown function
UHGV-0087622_4	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0087622_4	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0087622_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0087622_5	eggNOG-mapper	1298920.KI911353_gene4841	SLT domain	NA
UHGV-0087622_5	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0087622_5	COG	COG5412	Phage-related protein	NA
UHGV-0087622_5	Structural annotation	PF09325	NA	NA
UHGV-0087622_7	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0087622_7	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0087622_7	Pfam	PF16478	NA	DUF5055
UHGV-0087622_7	Structural annotation	PF16478	NA	NA
UHGV-0087622_8	PHROG	phrog_158	major tail protein	tail
UHGV-0087622_8	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0087622_8	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0087622_8	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0087622_8	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0087622_9	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0087622_11	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0087622_12	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0087622_12	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0087622_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0087622_12	Structural annotation	TIGR01560	NA	NA
UHGV-0087622_13	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0087622_13	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0087622_13	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0087622_13	Pfam	PF17236	NA	DUF5309
UHGV-0087622_13	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0087622_15	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0087622_15	UniRef90	UniRef90_A0A3D3Y4T2	Phage_Mu_F domain-containing protein	NA
UHGV-0087622_15	eggNOG-mapper	1120978.KB894087_gene432	Phage Mu protein F like protein	NA
UHGV-0087622_15	COG	COG2369	NA	NA
UHGV-0087622_15	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0087622_16	PHROG	phrog_64	portal protein	head and packaging
UHGV-0087622_16	UniRef90	UniRef90_A0A414B012	Phage portal protein	NA
UHGV-0087622_16	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0087622_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0087622_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0087622_17	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0087622_17	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0087622_17	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0087622_17	COG	COG5410	NA	NA
UHGV-0087622_17	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0087622_19	eggNOG-mapper	877421.AUJT01000010_gene538	NA	NA
UHGV-0087622_20	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0087622_20	PHROG	phrog_95	integrase	integration and excision
UHGV-0087622_20	UniRef90	UniRef90_E6UJR7	Resolvase domain	NA
UHGV-0087622_20	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0087622_20	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0087622_20	Pfam	PF07508	Recombinase	Recombinase
UHGV-0087622_20	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0087622_20	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0087622_24	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0087622_24	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0087622_24	UniRef90	UniRef90_A0A1C5UE43	Stage III sporulation protein E	NA
UHGV-0087622_24	eggNOG-mapper	1123386.AUIW01000005_gene1495	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-0087622_24	PADLOC	SspH_00004	SspH	SSP
UHGV-0087622_24	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0087622_24	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0087622_24	Structural annotation	PF01580, MF_01076, NF010404, COG0433	NA	NA
UHGV-0087622_25	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0087622_25	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0087622_25	eggNOG-mapper	1235802.C823_05975	NA	NA
UHGV-0087622_25	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0087622_25	Structural annotation	PF16677	NA	NA
UHGV-0087622_26	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0087622_26	UniRef90	UniRef90_H1CER1	Phage/plasmid primase, P4 family domain-containing protein	NA
UHGV-0087622_26	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-0087622_26	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0087622_26	Pfam	PF19263	NA	DUF5906
UHGV-0087622_26	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0087622_26	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0087622_26	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0087622_26	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-0087622_27	PHROG	phrog_31463	NA	unknown function
UHGV-0087622_29	Structural annotation	PF09871, COG4014	NA	NA
UHGV-0087622_32	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0087622_32	UniRef90	UniRef90_D7GQL9	Primase C terminal 1 (PriCT-1)./Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0087622_32	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0087622_32	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0087622_32	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0087622_32	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-0087622_33	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0087622_33	PHROG	phrog_5889	NA	unknown function
UHGV-0087622_33	UniRef90	UniRef90_A0A1C6L075	Predicted HD-superfamily hydrolase	NA
UHGV-0087622_33	eggNOG-mapper	1219626.HMPREF1639_07345	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0087622_33	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0087622_33	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-0087622_34	Structural annotation	PF05037	NA	NA
UHGV-0087622_35	eggNOG-mapper	1216932.CM240_0624	NA	NA