UHGV-0087692

Genome information

Genome length 34,076 bps

CDS count 50

Completeness 97.82% (high-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087692
vOTU ID	vOTU-014615
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_183157
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.82% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.27
Jumbo phage	No

Genome content
Genome length	34,076 bps
GC content	55.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.42%
Average CDS length	624.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087692_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0087692_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0087692_1	eggNOG-mapper	362242.MUL_3230	Recombinase zinc beta ribbon domain	NA
UHGV-0087692_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0087692_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0087692_2	UniRef90	UniRef90_A0A4R1QMH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0087692_2	eggNOG-mapper	445972.ANACOL_00210	NA	NA
UHGV-0087692_2	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0087692_2	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0087692_3	PHROG	phrog_1129	holin	lysis
UHGV-0087692_3	UniRef90	UniRef90_A0A8J6J3M3	Phage holin family protein	NA
UHGV-0087692_3	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0087692_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0087692_3	Structural annotation	PF06946	NA	NA
UHGV-0087692_4	PHROG	phrog_1863	NA	unknown function
UHGV-0087692_4	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0087692_4	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0087692_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0087692_5	PHROG	phrog_1794	amidase	lysis
UHGV-0087692_5	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0087692_5	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0087692_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0087692_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0087692_5	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0087692_6	Structural annotation	PF00629, NF033675	NA	NA
UHGV-0087692_8	PHROG	phrog_6616	tail protein	tail
UHGV-0087692_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0087692_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0087692_10	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0087692_10	COG	COG1511	NA	NA
UHGV-0087692_11	PHROG	phrog_706	NA	unknown function
UHGV-0087692_11	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0087692_11	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0087692_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0087692_11	Structural annotation	PF06854	NA	NA
UHGV-0087692_12	PHROG	phrog_11299	NA	unknown function
UHGV-0087692_12	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0087692_12	Structural annotation	PF10666	NA	NA
UHGV-0087692_13	PHROG	phrog_3099	NA	unknown function
UHGV-0087692_13	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0087692_13	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0087692_14	PHROG	phrog_3266	tail completion	connector
UHGV-0087692_14	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0087692_14	Structural annotation	PF12691	NA	NA
UHGV-0087692_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0087692_15	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0087692_15	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0087692_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0087692_15	Structural annotation	PF11114	NA	NA
UHGV-0087692_16	PHROG	phrog_3366	NA	unknown function
UHGV-0087692_16	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0087692_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0087692_17	eggNOG-mapper	33035.JPJF01000106_gene3131	NA	NA
UHGV-0087692_18	PHROG	phrog_267	major head protein	head and packaging
UHGV-0087692_18	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0087692_18	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0087692_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0087692_19	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0087692_19	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0087692_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0087692_19	Structural annotation	PF06810	NA	NA
UHGV-0087692_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0087692_21	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0087692_21	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0087692_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0087692_21	Pfam	PF21814	NA	DUF6883
UHGV-0087692_21	COG	COG2369	NA	NA
UHGV-0087692_21	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0087692_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0087692_22	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0087692_22	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0087692_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0087692_23	PHROG	phrog_1233	NA	unknown function
UHGV-0087692_23	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0087692_23	Structural annotation	PF13058	NA	NA
UHGV-0087692_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0087692_24	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0087692_24	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0087692_24	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0087692_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0087692_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0087692_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0087692_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0087692_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0087692_24	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0087692_25	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0087692_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0087692_26	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0087692_26	Pfam	PF07374	NA	DUF1492
UHGV-0087692_26	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0087692_28	PHROG	phrog_5781	NA	unknown function
UHGV-0087692_28	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0087692_28	Pfam	PF14359	NA	DUF4406
UHGV-0087692_28	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0087692_28	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0087692_29	PHROG	phrog_15609	NA	unknown function
UHGV-0087692_29	UniRef90	UniRef90_A0A7G9WGA3	NA	NA
UHGV-0087692_29	eggNOG-mapper	1378168.N510_01841	NA	NA
UHGV-0087692_29	Pfam	PF11300	NA	DUF3102
UHGV-0087692_29	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0087692_29	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0087692_30	PHROG	phrog_8470	NA	unknown function
UHGV-0087692_30	UniRef90	UniRef90_UPI001C1063FF	PcfJ domain-containing protein	NA
UHGV-0087692_30	eggNOG-mapper	1378168.N510_01842	PcfJ-like protein	NA
UHGV-0087692_30	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0087692_30	Structural annotation	PF14284	NA	NA
UHGV-0087692_31	PHROG	phrog_38338	NA	unknown function
UHGV-0087692_31	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0087692_31	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-0087692_32	KOfam	K03700	recU; recombination protein U	NA
UHGV-0087692_32	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0087692_32	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-0087692_32	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0087692_32	Pfam	PF03838	Recombination protein U	RecU
UHGV-0087692_32	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0087692_32	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0087692_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0087692_33	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0087692_33	Structural annotation	PF21578	NA	NA
UHGV-0087692_36	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0087692_36	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0087692_36	UniRef90	UniRef90_UPI0018F33479	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0087692_36	eggNOG-mapper	268407.PWYN_12320	AbrB family transcriptional regulator	NA
UHGV-0087692_36	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0087692_36	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0087692_36	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0087692_36	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0087692_38	PHROG	phrog_585	NA	unknown function
UHGV-0087692_38	Pfam	PF10711	NA	DUF2513
UHGV-0087692_39	PHROG	phrog_750	NA	unknown function
UHGV-0087692_39	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0087692_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0087692_42	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0087692_42	UniRef90	UniRef90_K1UM29	Helix-turn-helix domain protein (Fragment)	NA
UHGV-0087692_42	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0087692_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087692_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087692_42	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0087692_44	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0087692_44	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0087692_44	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-0087692_44	eggNOG-mapper	1869.MB27_26960	DNA-binding helix-turn-helix protein	NA
UHGV-0087692_44	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0087692_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0087692_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0087692_45	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0087692_45	PHROG	phrog_19856	NA	unknown function
UHGV-0087692_45	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0087692_45	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0087692_45	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0087692_45	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0087692_46	Structural annotation	PF21227	NA	NA
UHGV-0087692_47	PHROG	phrog_5978	NA	unknown function
UHGV-0087692_47	UniRef90	UniRef90_A0A372UZA0	Fic family protein	NA
UHGV-0087692_47	eggNOG-mapper	479437.Elen_3019	Filamentation induced by cAMP protein fic	NA
UHGV-0087692_47	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0087692_47	COG	COG3177	Fic family protein	NA
UHGV-0087692_47	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0087692_48	KOfam	K14059	int; integrase	NA
UHGV-0087692_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0087692_48	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-0087692_48	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0087692_48	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0087692_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0087692_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0087692_48	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0087692_49	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0087692_49	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087692_49	UniRef90	UniRef90_R5AWG7	Putative endonuclease	NA
UHGV-0087692_49	eggNOG-mapper	693746.OBV_19760	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0087692_49	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0087692_49	COG	COG4748	NA	NA
UHGV-0087692_49	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA