UHGV-0087781

Genome information

vOTU vOTU-019683

Genome length 31,318 bps

CDS count 49

Completeness 86.65% (medium-quality)

geNomad score 0.9704

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087781
vOTU ID	vOTU-019683
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_177040
BioSample	SAMEA3449417
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9704
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.05
Jumbo phage	No

Genome content
Genome length	31,318 bps
GC content	47.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.72%
Average CDS length	611.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087781_1	KOfam	K14059	int; integrase	NA
UHGV-0087781_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0087781_1	UniRef90	UniRef90_UPI001C0F402D	site-specific integrase	NA
UHGV-0087781_1	eggNOG-mapper	643648.Slip_1975	Belongs to the 'phage' integrase family	NA
UHGV-0087781_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0087781_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0087781_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0087781_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0087781_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0087781_3	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0087781_3	UniRef90	UniRef90_A0A833HMU5	Helix-turn-helix transcriptional regulator	NA
UHGV-0087781_3	eggNOG-mapper	742738.HMPREF9460_00775	Peptidase S24-like	NA
UHGV-0087781_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087781_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0087781_3	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-0087781_4	UniRef90	UniRef90_R9CDN0	HTH cro/C1-type domain-containing protein	NA
UHGV-0087781_6	Structural annotation	PF09202, MF_01177, TIGR01889, COG5631	NA	NA
UHGV-0087781_7	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0087781_8	Structural annotation	MF_00273, NF001981	NA	NA
UHGV-0087781_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0087781_11	eggNOG-mapper	1145276.T479_20115	NA	NA
UHGV-0087781_11	Structural annotation	PF21578	NA	NA
UHGV-0087781_13	PHROG	phrog_24518	NA	unknown function
UHGV-0087781_13	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0087781_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0087781_14	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0087781_15	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0087781_15	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087781_15	UniRef90	UniRef90_UPI001897DF0D	HNH endonuclease	NA
UHGV-0087781_15	eggNOG-mapper	508419.F8J1A6_9CAUD	HNH endonuclease	NA
UHGV-0087781_15	Pfam	PF13391	HNH endonuclease	HNH_2
UHGV-0087781_16	UniRef90	UniRef90_UPI001898F58A	P27 family phage terminase small subunit	NA
UHGV-0087781_16	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-0087781_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0087781_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0087781_17	UniRef90	UniRef90_UPI0018982ECF	terminase large subunit	NA
UHGV-0087781_17	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0087781_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0087781_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0087781_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0087781_17	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0087781_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0087781_18	UniRef90	UniRef90_UPI00189D81A2	phage portal protein	NA
UHGV-0087781_18	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0087781_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0087781_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0087781_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0087781_18	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0087781_19	KOfam	K06904	NA	NA
UHGV-0087781_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0087781_19	UniRef90	UniRef90_UPI00082C16F5	HK97 family phage prohead protease	NA
UHGV-0087781_19	eggNOG-mapper	1304866.K413DRAFT_1224	Phage prohead protease, HK97 family	NA
UHGV-0087781_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0087781_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0087781_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0087781_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0087781_20	UniRef90	UniRef90_UPI0009511B79	phage major capsid protein	NA
UHGV-0087781_20	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0087781_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0087781_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0087781_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0087781_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0087781_21	UniRef90	UniRef90_UPI0018979B98	head-tail connector protein	NA
UHGV-0087781_21	eggNOG-mapper	1285586.H131_21297	Phage gp6-like head-tail connector protein	NA
UHGV-0087781_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0087781_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0087781_22	PHROG	phrog_29848	NA	unknown function
UHGV-0087781_22	eggNOG-mapper	1291050.JAGE01000001_gene2924	NA	NA
UHGV-0087781_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0087781_23	eggNOG-mapper	1291050.JAGE01000001_gene2925	NA	NA
UHGV-0087781_23	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0087781_24	PHROG	phrog_525	NA	unknown function
UHGV-0087781_24	eggNOG-mapper	1121334.KB911073_gene1863	NA	NA
UHGV-0087781_24	Pfam	PF20765	NA	DUF6838
UHGV-0087781_24	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0087781_25	PHROG	phrog_1480	tail sheath	tail
UHGV-0087781_25	UniRef90	UniRef90_A0A4Z0XVH4	Phage tail sheath protein	NA
UHGV-0087781_25	eggNOG-mapper	756499.Desde_4116	PFAM Phage tail sheath protein	NA
UHGV-0087781_25	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0087781_25	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0087781_25	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0087781_26	PHROG	phrog_365	tail protein	tail
UHGV-0087781_26	UniRef90	UniRef90_A0A2N2CMT0	Phage portal protein	NA
UHGV-0087781_26	eggNOG-mapper	1297617.JPJD01000034_gene681	Phage tail tube protein	NA
UHGV-0087781_26	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0087781_26	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0087781_27	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0087781_27	UniRef90	UniRef90_UPI0012672CCD	XkdN-like protein	NA
UHGV-0087781_27	eggNOG-mapper	1501230.ET33_02335	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0087781_27	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0087781_27	Structural annotation	PF08890	NA	NA
UHGV-0087781_28	PHROG	phrog_33570	NA	unknown function
UHGV-0087781_28	UniRef90	UniRef90_A0A4Z0YEF1	TMP_3 domain-containing protein	NA
UHGV-0087781_28	eggNOG-mapper	1291050.JAGE01000001_gene2931	tape measure	NA
UHGV-0087781_28	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0087781_28	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0087781_28	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0087781_28	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0087781_29	PHROG	phrog_380	endolysin	lysis
UHGV-0087781_29	UniRef90	UniRef90_B8FZ51	Peptidoglycan-binding LysM	NA
UHGV-0087781_29	eggNOG-mapper	1121334.KB911073_gene1867	Lysin motif	NA
UHGV-0087781_29	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0087781_30	PHROG	phrog_400	tail protein	tail
UHGV-0087781_30	UniRef90	UniRef90_A0A7S7J193	Alpha/beta hydrolase	NA
UHGV-0087781_30	eggNOG-mapper	1291050.JAGE01000001_gene2933	NLP P60 protein	NA
UHGV-0087781_30	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0087781_30	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0087781_31	PHROG	phrog_579	NA	unknown function
UHGV-0087781_31	Pfam	PF10844	NA	DUF2577
UHGV-0087781_31	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0087781_32	PHROG	phrog_120	baseplate protein	tail
UHGV-0087781_32	UniRef90	UniRef90_G9YP57	Phage protein XkdS domain protein	NA
UHGV-0087781_32	eggNOG-mapper	742738.HMPREF9460_04275	NA	NA
UHGV-0087781_32	Pfam	PF10934	NA	DUF2634
UHGV-0087781_32	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0087781_32	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0087781_33	PHROG	phrog_6	baseplate protein	tail
UHGV-0087781_33	UniRef90	UniRef90_A0A0S2W5I2	Baseplate_J domain-containing protein	NA
UHGV-0087781_33	eggNOG-mapper	1297617.JPJD01000034_gene673	Baseplate J-like protein	NA
UHGV-0087781_33	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0087781_33	COG	COG3299	NA	NA
UHGV-0087781_33	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0087781_34	PHROG	phrog_521	tail protein	tail
UHGV-0087781_34	UniRef90	UniRef90_A0A4R4E3P7	NA	NA
UHGV-0087781_34	eggNOG-mapper	1297617.JPJD01000034_gene672	NA	NA
UHGV-0087781_34	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0087781_34	COG	COG3778	NA	NA
UHGV-0087781_35	PHROG	phrog_23587	NA	unknown function
UHGV-0087781_38	Structural annotation	PF10651	NA	NA
UHGV-0087781_39	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0087781_39	UniRef90	UniRef90_UPI001AB02C10	four helix bundle protein	NA
UHGV-0087781_39	eggNOG-mapper	525254.HMPREF0072_1280	NA	NA
UHGV-0087781_39	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-0087781_41	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0087781_41	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0087781_41	UniRef90	UniRef90_A0A2V2EB46	Reverse transcriptase	NA
UHGV-0087781_41	eggNOG-mapper	1226322.HMPREF1545_03570	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0087781_41	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0087781_41	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0087781_41	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0087781_41	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0087781_42	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0087781_42	UniRef90	UniRef90_A0A2V2EEC3	NA	NA
UHGV-0087781_42	eggNOG-mapper	1226322.HMPREF1545_03571	cellulose binding	NA
UHGV-0087781_42	Pfam	PF19789	NA	DUF6273
UHGV-0087781_42	COG	COG4447	NA	NA
UHGV-0087781_42	Structural annotation	PF19789	NA	NA
UHGV-0087781_46	KOfam	K19303	mepH; murein DD-endopeptidase [EC:3.4.-.-]	NA
UHGV-0087781_46	PHROG	phrog_329	minor tail protein	tail
UHGV-0087781_46	UniRef90	UniRef90_A0A2V2EEK9	NlpC/P60 domain-containing protein	NA
UHGV-0087781_46	eggNOG-mapper	1291050.JAGE01000001_gene1470	NlpC/P60 family	NA
UHGV-0087781_46	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0087781_46	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0087781_46	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0087781_47	PHROG	phrog_199	holin	lysis
UHGV-0087781_47	UniRef90	UniRef90_A0A2V2FS45	Holin	NA
UHGV-0087781_47	eggNOG-mapper	1286171.EAL2_c05460	Bacteriophage holin family	NA
UHGV-0087781_47	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0087781_47	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0087781_47	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0087781_47	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0087781_48	UniRef90	UniRef90_UPI001BBD7D65	TIGR04255 family protein	NA
UHGV-0087781_48	NCBIFam	TIGR04255.1	TIGR04255 family protein	NA
UHGV-0087781_48	Structural annotation	PF08680, MF_00408, TIGR04255, COG2101	NA	NA