UHGV-0087797

Genome information

Genome length 51,436 bps

CDS count 90

Completeness 100.00% (complete)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087797
vOTU ID	vOTU-000174
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_185611
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.87
Jumbo phage	No

Genome content
Genome length	51,436 bps
GC content	46.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	90
CDS density	88.38%
Average CDS length	507.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087797_1	PHROG	phrog_5070	NA	unknown function
UHGV-0087797_1	UniRef90	UniRef90_A0A412PKE0	Polymer-forming cytoskeletal protein (Fragment)	NA
UHGV-0087797_1	eggNOG-mapper	1280692.AUJL01000011_gene3221	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0087797_1	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0087797_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0087797_6	Structural annotation	PF06531, TIGR04550, COG3422	NA	NA
UHGV-0087797_9	Structural annotation	PF13620, TIGR02465	NA	NA
UHGV-0087797_10	Structural annotation	PF13620, TIGR04134, COG2512	NA	NA
UHGV-0087797_12	Structural annotation	PF05475, TIGR03511	NA	NA
UHGV-0087797_14	UniRef90	UniRef90_UPI000F76D701	baseplate assembly protein	NA
UHGV-0087797_14	eggNOG-mapper	469610.HMPREF0189_01204	Baseplate assembly protein	NA
UHGV-0087797_14	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0087797_14	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0087797_14	Structural annotation	PF18352, TIGR01644, COG4540	NA	NA
UHGV-0087797_15	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0087797_15	UniRef90	UniRef90_A0A0U5EZN2	Burkholderia phage Bcep781 gp38	NA
UHGV-0087797_15	eggNOG-mapper	1505225.A0A068CDF8_9CAUD	NA	NA
UHGV-0087797_15	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0087797_16	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0087797_16	eggNOG-mapper	90371.CY43_09625	NA	NA
UHGV-0087797_17	PHROG	phrog_1830	NA	unknown function
UHGV-0087797_17	eggNOG-mapper	1408428.JNJP01000012_gene1131	NA	NA
UHGV-0087797_17	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0087797_17	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0087797_18	PHROG	phrog_3824	NA	unknown function
UHGV-0087797_18	UniRef90	UniRef90_A0A1R1JTL7	Phage tail protein	NA
UHGV-0087797_18	eggNOG-mapper	207597.Q8H9M4_9CAUD	amidase activity	NA
UHGV-0087797_18	Structural annotation	TIGR01760	NA	NA
UHGV-0087797_19	PHROG	phrog_1932	tail assembly chaperone	tail
UHGV-0087797_19	eggNOG-mapper	546268.NEISUBOT_05176	NA	NA
UHGV-0087797_19	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0087797_19	Structural annotation	PF21822	NA	NA
UHGV-0087797_20	PHROG	phrog_1964	virion structural protein	head and packaging
UHGV-0087797_20	eggNOG-mapper	469610.HMPREF0189_01198	NA	NA
UHGV-0087797_20	Structural annotation	PF11681, TIGR01603, COG3157	NA	NA
UHGV-0087797_21	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0087797_21	UniRef90	UniRef90_UPI000F0CB9E6	NA	NA
UHGV-0087797_21	eggNOG-mapper	469610.HMPREF0189_01197	NA	NA
UHGV-0087797_21	Pfam	PF11863	NA	DUF3383
UHGV-0087797_21	Structural annotation	PF11863, COG4386	NA	NA
UHGV-0087797_22	PHROG	phrog_1876	NA	unknown function
UHGV-0087797_22	eggNOG-mapper	762966.HMPREF9439_01041	NA	NA
UHGV-0087797_22	Structural annotation	PF16807	NA	NA
UHGV-0087797_23	PHROG	phrog_1912	head protein	head and packaging
UHGV-0087797_23	eggNOG-mapper	742823.HMPREF9465_00937	NA	NA
UHGV-0087797_24	PHROG	phrog_222	tail protein	tail
UHGV-0087797_24	UniRef90	UniRef90_K4PB52	Putative RNA polymerase	NA
UHGV-0087797_24	eggNOG-mapper	585.DR95_1289	NA	NA
UHGV-0087797_25	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0087797_25	UniRef90	UniRef90_UPI0010337860	NA	NA
UHGV-0087797_25	eggNOG-mapper	1205683.CAKR01000013_gene1187	NA	NA
UHGV-0087797_25	Pfam	PF13262	NA	DUF4054
UHGV-0087797_25	Structural annotation	PF13262	NA	NA
UHGV-0087797_26	PHROG	phrog_2085	NA	unknown function
UHGV-0087797_27	PHROG	phrog_264	major head protein	head and packaging
UHGV-0087797_27	UniRef90	UniRef90_UPI000F0C52E9	NA	NA
UHGV-0087797_27	eggNOG-mapper	1408428.JNJP01000012_gene1117	Protein conserved in bacteria	NA
UHGV-0087797_27	Pfam	PF09950	NA	DUF2184
UHGV-0087797_27	COG	COG4834	NA	NA
UHGV-0087797_27	Structural annotation	PF09950, MF_04119, NF041155, COG4834	NA	NA
UHGV-0087797_28	PHROG	phrog_2122	minor head protein	head and packaging
UHGV-0087797_28	eggNOG-mapper	1218075.BAYA01000003_gene634	NA	NA
UHGV-0087797_29	KOfam	K09960	NA	NA
UHGV-0087797_29	PHROG	phrog_2229	head maturation protease	head and packaging
UHGV-0087797_29	UniRef90	UniRef90_UPI000F0BF560	NA	NA
UHGV-0087797_29	eggNOG-mapper	1408428.JNJP01000012_gene1115	NA	NA
UHGV-0087797_29	Pfam	PF09979	NA	DUF2213
UHGV-0087797_29	COG	COG3566	NA	NA
UHGV-0087797_29	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0087797_30	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0087797_30	UniRef90	UniRef90_A0A1Y4CYL3	Phage_Mu_F domain-containing protein	NA
UHGV-0087797_30	eggNOG-mapper	1408428.JNJP01000012_gene1114	protein homolog of phage Mu protein gp30	NA
UHGV-0087797_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0087797_30	COG	COG2369	NA	NA
UHGV-0087797_30	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0087797_31	KOfam	K09961	NA	NA
UHGV-0087797_31	PHROG	phrog_146	portal protein	head and packaging
UHGV-0087797_31	UniRef90	UniRef90_UPI000F0C75D1	NA	NA
UHGV-0087797_31	eggNOG-mapper	1408428.JNJP01000012_gene1113	NA	NA
UHGV-0087797_31	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0087797_31	COG	COG3567	NA	NA
UHGV-0087797_31	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0087797_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0087797_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0087797_32	UniRef90	UniRef90_A0A1M6MYR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0087797_32	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0087797_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0087797_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0087797_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0087797_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0087797_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0087797_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0087797_33	UniRef90	UniRef90_A0A2N6SUJ5	Terminase small subunit	NA
UHGV-0087797_33	eggNOG-mapper	562981.HMPREF0428_01825	Terminase small subunit	NA
UHGV-0087797_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0087797_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0087797_34	PHROG	phrog_2143	NA	unknown function
UHGV-0087797_34	eggNOG-mapper	1327935.A0A060AMX0_9CAUD	NA	NA
UHGV-0087797_35	eggNOG-mapper	1410630.JNKP01000001_gene2076	Helix-turn-helix XRE-family like proteins	NA
UHGV-0087797_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087797_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087797_36	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0087797_36	UniRef90	UniRef90_UPI001940788E	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0087797_36	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0087797_36	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0087797_36	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0087797_37	UniRef90	UniRef90_UPI0010329B00	helix-turn-helix domain-containing protein	NA
UHGV-0087797_37	Structural annotation	PF13384	NA	NA
UHGV-0087797_45	PHROG	phrog_5867	endolysin	lysis
UHGV-0087797_45	UniRef90	UniRef90_K9D396	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0087797_45	eggNOG-mapper	883156.HMPREF9282_00575	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0087797_45	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0087797_45	Structural annotation	MF_04111	NA	NA
UHGV-0087797_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0087797_51	eggNOG-mapper	1122931.AUAE01000014_gene2034	TM2 domain protein	NA
UHGV-0087797_51	Pfam	PF05154	TM2 domain	TM2
UHGV-0087797_51	COG	COG2314	NA	NA
UHGV-0087797_54	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0087797_54	COG	COG0662	Mannose-6-phosphate isomerase, cupin superfamily	NA
UHGV-0087797_57	PHROG	phrog_14970	NA	unknown function
UHGV-0087797_57	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-0087797_57	eggNOG-mapper	435590.BVU_2861	double-strand break repair protein	NA
UHGV-0087797_57	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0087797_57	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0087797_62	PHROG	phrog_8514	NA	unknown function
UHGV-0087797_65	PHROG	phrog_2776	NA	unknown function
UHGV-0087797_65	UniRef90	UniRef90_A0A2S7ZCT0	DNA repair protein MmcB-related protein	NA
UHGV-0087797_65	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0087797_66	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0087797_66	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0087797_66	UniRef90	UniRef90_UPI001032A0E4	dUTP diphosphatase	NA
UHGV-0087797_66	eggNOG-mapper	66692.ABC2847	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0087797_66	Pfam	PF00692	dUTPase	dUTPase
UHGV-0087797_66	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0087797_66	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0087797_71	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0087797_71	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0087797_71	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0087797_74	Structural annotation	PF14301	NA	NA
UHGV-0087797_75	eggNOG-mapper	1200557.JHWV01000006_gene1705	Membrane	NA
UHGV-0087797_75	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0087797_75	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0087797_76	PHROG	phrog_12796	tail fiber protein	tail
UHGV-0087797_76	eggNOG-mapper	1505225.A0A068CBG7_9CAUD	NA	NA
UHGV-0087797_76	Structural annotation	PF15417, NF033208, COG1843	NA	NA
UHGV-0087797_77	PHROG	phrog_587	structural protein	head and packaging
UHGV-0087797_77	UniRef90	UniRef90_UPI000F0C82A7	NA	NA
UHGV-0087797_77	eggNOG-mapper	626418.bglu_1g21270	NA	NA
UHGV-0087797_77	Pfam	PF11041	NA	DUF2612
UHGV-0087797_77	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0087797_78	PHROG	phrog_6	baseplate protein	tail
UHGV-0087797_78	UniRef90	UniRef90_UPI000F0C4906	baseplate J/gp47 family protein	NA
UHGV-0087797_78	eggNOG-mapper	1408428.JNJP01000012_gene1137	of phage Mu protein gp47	NA
UHGV-0087797_78	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0087797_78	COG	COG3299	NA	NA
UHGV-0087797_78	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0087797_79	PHROG	phrog_120	baseplate protein	tail
UHGV-0087797_79	eggNOG-mapper	1433287.X808_9280	NA	NA
UHGV-0087797_81	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0087797_82	Structural annotation	PF00635, NF012200, COG3539	NA	NA
UHGV-0087797_88	PHROG	phrog_1008	DNA methyltransferase	other
UHGV-0087797_88	UniRef90	UniRef90_E6X1S7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0087797_88	eggNOG-mapper	521098.Aaci_0567	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0087797_88	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0087797_90	PHROG	phrog_7964	NA	unknown function
UHGV-0087797_90	eggNOG-mapper	1232443.BAIA02000066_gene981	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0087797_90	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0087797_90	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA