UHGV-0087818

Genome information

Genome length 40,538 bps

CDS count 72

Completeness 100.00% (complete)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087818
vOTU ID	vOTU-045265
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_184729
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.44
Jumbo phage	No

Genome content
Genome length	40,538 bps
GC content	52.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	91.18%
Average CDS length	516.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087818_2	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0087818_2	PHROG	phrog_894	endolysin	lysis
UHGV-0087818_2	UniRef90	UniRef90_UPI001C12323B	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0087818_2	eggNOG-mapper	903814.ELI_0090	Peptidoglycan-binding domain 1 protein	NA
UHGV-0087818_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0087818_2	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0087818_2	COG	COG3108	NA	NA
UHGV-0087818_2	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0087818_3	PHROG	phrog_4105	NA	unknown function
UHGV-0087818_3	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0087818_3	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0087818_4	PHROG	phrog_774	NA	unknown function
UHGV-0087818_4	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0087818_5	PHROG	phrog_10091	holin	lysis
UHGV-0087818_5	UniRef90	UniRef90_A0A374DX82	Phage holin	NA
UHGV-0087818_5	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0087818_5	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0087818_5	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0087818_5	COG	COG5546	NA	NA
UHGV-0087818_5	Structural annotation	COG5546	NA	NA
UHGV-0087818_6	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0087818_7	PHROG	phrog_3754	NA	unknown function
UHGV-0087818_7	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0087818_8	PHROG	phrog_21718	NA	unknown function
UHGV-0087818_8	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0087818_9	PHROG	phrog_22984	NA	unknown function
UHGV-0087818_10	PHROG	phrog_16490	NA	unknown function
UHGV-0087818_10	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0087818_11	PHROG	phrog_20016	NA	unknown function
UHGV-0087818_11	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0087818_11	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0087818_11	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0087818_12	Structural annotation	PF12510	NA	NA
UHGV-0087818_15	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087818_15	UniRef90	UniRef90_A0A3B8ET30	Alcohol dehydrogenase	NA
UHGV-0087818_15	eggNOG-mapper	1302286.BAOT01000045_gene1721	NA	NA
UHGV-0087818_15	Structural annotation	PF17375	NA	NA
UHGV-0087818_16	PHROG	phrog_25567	NA	unknown function
UHGV-0087818_16	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0087818_16	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0087818_16	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0087818_17	KOfam	K14059	int; integrase	NA
UHGV-0087818_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0087818_17	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-0087818_17	eggNOG-mapper	1226322.HMPREF1545_03745	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0087818_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0087818_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0087818_17	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0087818_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087818_18	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0087818_18	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0087818_23	PHROG	phrog_585	NA	unknown function
UHGV-0087818_23	UniRef90	UniRef90_UPI0008A69A23	NA	NA
UHGV-0087818_23	eggNOG-mapper	543734.LCABL_13080	NA	NA
UHGV-0087818_23	Pfam	PF10711	NA	DUF2513
UHGV-0087818_23	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0087818_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087818_24	UniRef90	UniRef90_A0A372V3Y4	XRE family transcriptional regulator	NA
UHGV-0087818_24	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-0087818_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087818_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087818_24	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0087818_26	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-0087818_31	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0087818_31	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0087818_31	UniRef90	UniRef90_UPI0002EC8427	helix-turn-helix transcriptional regulator	NA
UHGV-0087818_31	eggNOG-mapper	1235794.C811_01748	Putative zinc ribbon domain	NA
UHGV-0087818_31	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0087818_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087818_31	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0087818_31	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0087818_32	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087818_32	UniRef90	UniRef90_A0A2N5PKD7	Recombinase	NA
UHGV-0087818_32	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0087818_32	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0087818_32	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0087818_32	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0087818_32	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0087818_33	PHROG	phrog_674	NA	unknown function
UHGV-0087818_33	UniRef90	UniRef90_A0A844E1E5	NA	NA
UHGV-0087818_33	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0087818_33	Pfam	PF07083	NA	DUF1351
UHGV-0087818_33	Structural annotation	PF07083	NA	NA
UHGV-0087818_34	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0087818_34	UniRef90	UniRef90_A0A3A6C308	Phage recombination protein Bet	NA
UHGV-0087818_34	eggNOG-mapper	86416.Clopa_4307	Phage recombination protein Bet	NA
UHGV-0087818_34	Pfam	PF03837	RecT family	RecT
UHGV-0087818_34	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0087818_34	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0087818_34	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0087818_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0087818_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0087818_35	UniRef90	UniRef90_UPI001C118A83	single-stranded DNA-binding protein	NA
UHGV-0087818_35	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0087818_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0087818_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0087818_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0087818_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0087818_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0087818_36	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0087818_36	UniRef90	UniRef90_A0A3R6WN18	NA	NA
UHGV-0087818_36	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0087818_36	Pfam	PF06356	NA	DUF1064
UHGV-0087818_36	Structural annotation	PF06356	NA	NA
UHGV-0087818_37	PHROG	phrog_15768	NA	unknown function
UHGV-0087818_37	UniRef90	UniRef90_R6RVQ1	Chromosome segregation ATPases	NA
UHGV-0087818_37	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0087818_37	AcrCatalog	cluster_14472	NA	NA
UHGV-0087818_37	Pfam	PF19808	NA	DUF6291
UHGV-0087818_37	Structural annotation	PF19808	NA	NA
UHGV-0087818_38	PHROG	phrog_9804	NA	unknown function
UHGV-0087818_38	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0087818_38	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0087818_38	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0087818_38	Structural annotation	PF11417	NA	NA
UHGV-0087818_39	Pfam	PF09889	NA	DUF2116
UHGV-0087818_39	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0087818_42	eggNOG-mapper	1123263.AUKY01000096_gene1822	C-5 cytosine-specific DNA methylase	NA
UHGV-0087818_42	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0087818_43	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0087818_43	UniRef90	UniRef90_H1CCS3	Elp3 domain-containing protein	NA
UHGV-0087818_43	eggNOG-mapper	742817.HMPREF9449_01796	radical SAM domain protein	NA
UHGV-0087818_43	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0087818_44	PHROG	phrog_2164	NA	unknown function
UHGV-0087818_44	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0087818_45	PHROG	phrog_924	NA	unknown function
UHGV-0087818_45	UniRef90	UniRef90_R5EM45	NA	NA
UHGV-0087818_45	Pfam	PF04448	NA	DUF551
UHGV-0087818_50	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0087818_50	PHROG	phrog_21498	NA	unknown function
UHGV-0087818_50	UniRef90	UniRef90_A0A7X2P836	ParB domain-containing protein	NA
UHGV-0087818_50	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0087818_50	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0087818_50	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0087818_50	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0087818_50	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0087818_54	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0087818_54	UniRef90	UniRef90_UPI00166CA12B	terminase family protein	NA
UHGV-0087818_54	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0087818_54	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0087818_55	PHROG	phrog_64	portal protein	head and packaging
UHGV-0087818_55	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0087818_55	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0087818_55	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0087818_55	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0087818_56	PHROG	phrog_859	portal protein	head and packaging
UHGV-0087818_56	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0087818_56	eggNOG-mapper	1140001.I571_01831	Phage Mu protein F like protein	NA
UHGV-0087818_56	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0087818_56	COG	COG2369	NA	NA
UHGV-0087818_56	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0087818_59	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0087818_59	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0087818_59	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0087818_59	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0087818_59	COG	COG5005	NA	NA
UHGV-0087818_59	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0087818_60	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0087818_60	Structural annotation	PF06810	NA	NA
UHGV-0087818_61	PHROG	phrog_544	major head protein	head and packaging
UHGV-0087818_61	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0087818_61	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0087818_61	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0087818_63	PHROG	phrog_17977	NA	unknown function
UHGV-0087818_63	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0087818_63	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0087818_63	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0087818_64	PHROG	phrog_17405	head protein	head and packaging
UHGV-0087818_64	Structural annotation	PF11367	NA	NA
UHGV-0087818_65	PHROG	phrog_885	major tail protein	tail
UHGV-0087818_65	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0087818_65	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0087818_65	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0087818_68	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0087818_68	UniRef90	UniRef90_A0A059N3D7	Phage tail tape measure protein, TP901 family	NA
UHGV-0087818_68	eggNOG-mapper	1201292.DR75_1631	Phage-related minor tail protein	NA
UHGV-0087818_68	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0087818_68	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0087818_68	COG	COG5283	Phage-related tail protein	NA
UHGV-0087818_68	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0087818_69	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0087818_69	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0087818_69	eggNOG-mapper	536232.CLM_2045	Phage tail protein	NA
UHGV-0087818_69	COG	COG4722	Phage-related protein YomH	NA
UHGV-0087818_69	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0087818_70	PHROG	phrog_538	minor tail protein	tail
UHGV-0087818_70	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0087818_70	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0087818_70	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0087818_70	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0087818_71	PHROG	phrog_9534	head protein	head and packaging
UHGV-0087818_71	UniRef90	UniRef90_R6SMG3	Conserved domain protein	NA
UHGV-0087818_71	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0087818_72	Structural annotation	PF03425, NF038128, COG5156	NA	NA