UHGV-0087841

Genome information

Genome length 46,075 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087841
vOTU ID	vOTU-001585
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_182926
BioSample	SAMEA3449421
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.62
Jumbo phage	No

Genome content
Genome length	46,075 bps
GC content	40.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.75%
Average CDS length	592.73 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087841_1	PHROG	phrog_544	major head protein	head and packaging
UHGV-0087841_1	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0087841_1	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0087841_1	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0087841_1	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0087841_2	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0087841_2	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0087841_4	PHROG	phrog_1129	holin	lysis
UHGV-0087841_4	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0087841_4	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0087841_4	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0087841_4	Structural annotation	PF06946	NA	NA
UHGV-0087841_5	PHROG	phrog_3366	NA	unknown function
UHGV-0087841_5	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0087841_5	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0087841_6	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0087841_6	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0087841_6	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0087841_6	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0087841_6	Structural annotation	PF11114	NA	NA
UHGV-0087841_7	PHROG	phrog_3266	tail completion	connector
UHGV-0087841_7	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0087841_7	Structural annotation	PF12691	NA	NA
UHGV-0087841_8	PHROG	phrog_3099	NA	unknown function
UHGV-0087841_8	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0087841_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0087841_9	PHROG	phrog_11299	NA	unknown function
UHGV-0087841_9	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0087841_9	Structural annotation	PF10666	NA	NA
UHGV-0087841_10	PHROG	phrog_706	NA	unknown function
UHGV-0087841_10	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0087841_10	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0087841_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0087841_10	Structural annotation	PF06854	NA	NA
UHGV-0087841_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0087841_11	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0087841_11	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0087841_11	COG	COG1511	NA	NA
UHGV-0087841_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0087841_12	PHROG	phrog_1194	NA	unknown function
UHGV-0087841_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0087841_13	PHROG	phrog_6616	tail protein	tail
UHGV-0087841_13	UniRef90	UniRef90_A0A352BLY8	Peptidase S74 domain-containing protein	NA
UHGV-0087841_13	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0087841_13	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0087841_14	PHROG	phrog_18444	NA	unknown function
UHGV-0087841_15	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0087841_15	PHROG	phrog_819	tail protein	tail
UHGV-0087841_15	UniRef90	UniRef90_A0A6L8SWW0	Fibronectin type-III domain-containing protein	NA
UHGV-0087841_15	eggNOG-mapper	1508644.SFBmNL_00815	NA	NA
UHGV-0087841_15	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0087841_15	Pfam	PF19789	NA	DUF6273
UHGV-0087841_15	Structural annotation	PF19789, PF16323, COG2033	NA	NA
UHGV-0087841_17	Structural annotation	NF040910	NA	NA
UHGV-0087841_18	KOfam	K07273	acm; lysozyme	NA
UHGV-0087841_18	PHROG	phrog_6745	endolysin	lysis
UHGV-0087841_18	UniRef90	UniRef90_A0A6L8SXR6	CHAP domain-containing protein	NA
UHGV-0087841_18	eggNOG-mapper	1121115.AXVN01000006_gene2170	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0087841_18	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0087841_18	Pfam	PF05257	CHAP domain	CHAP
UHGV-0087841_18	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0087841_18	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0087841_18	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-0087841_19	KOfam	K14059	int; integrase	NA
UHGV-0087841_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0087841_19	UniRef90	UniRef90_A0A6L8SXX0	Tyrosine-type recombinase/integrase	NA
UHGV-0087841_19	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0087841_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0087841_19	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0087841_20	UniRef90	UniRef90_A0A3A6GQZ1	Zinc ribbon domain-containing protein	NA
UHGV-0087841_20	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0087841_20	COG	COG2314	NA	NA
UHGV-0087841_22	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0087841_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087841_22	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0087841_22	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0087841_22	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0087841_22	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0087841_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087841_22	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0087841_27	UniRef90	UniRef90_A0A395X814	XRE family transcriptional regulator	NA
UHGV-0087841_27	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0087841_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0087841_27	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0087841_28	Structural annotation	PF13601, MF_01819, NF008565, COG1846	NA	NA
UHGV-0087841_29	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0087841_29	UniRef90	UniRef90_A0A3A6GZT3	Phage repressor protein	NA
UHGV-0087841_29	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0087841_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0087841_29	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0087841_29	COG	COG3617	Prophage antirepressor	NA
UHGV-0087841_29	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0087841_30	PHROG	phrog_6058	NA	unknown function
UHGV-0087841_30	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0087841_30	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0087841_31	AcrCatalog	cluster_17974	NA	NA
UHGV-0087841_35	Structural annotation	NF011879	NA	NA
UHGV-0087841_36	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0087841_37	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0087841_37	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0087841_37	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0087841_37	Pfam	PF13479	AAA domain	AAA_24
UHGV-0087841_37	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0087841_38	PHROG	phrog_18107	NA	unknown function
UHGV-0087841_38	eggNOG-mapper	397290.C810_05167	NA	NA
UHGV-0087841_38	Structural annotation	PF05037	NA	NA
UHGV-0087841_39	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087841_39	UniRef90	UniRef90_A0A8D9UHJ5	Intron associated endonuclease	NA
UHGV-0087841_39	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-0087841_39	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0087841_39	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0087841_39	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0087841_39	Structural annotation	PF19835, PF07453, TIGR01453, COG2827	NA	NA
UHGV-0087841_40	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0087841_40	UniRef90	UniRef90_UPI00156FB923	ERCC4 domain-containing protein	NA
UHGV-0087841_40	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0087841_40	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0087841_40	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0087841_41	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0087841_41	PHROG	phrog_11992	NA	unknown function
UHGV-0087841_41	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-0087841_41	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0087841_41	PADLOC	drt-UG29	DRT	DRT
UHGV-0087841_41	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0087841_41	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0087841_41	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0087841_42	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0087841_42	UniRef90	UniRef90_A0A3A6GQS5	NA	NA
UHGV-0087841_42	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0087841_42	Pfam	PF06048	NA	DUF927
UHGV-0087841_42	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0087841_42	COG	COG5519	NA	NA
UHGV-0087841_42	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0087841_43	KOfam	K15255	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	NA
UHGV-0087841_43	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-0087841_43	UniRef90	UniRef90_A0A2V2D011	AAA domain-containing protein	NA
UHGV-0087841_43	eggNOG-mapper	1121333.JMLH01000003_gene334	PIF1-like helicase	NA
UHGV-0087841_43	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-0087841_43	Pfam	PF05970	PIF1-like helicase	PIF1
UHGV-0087841_43	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0087841_43	Structural annotation	PF05970, PF18350, MF_03176, TIGR02768, COG0507	NA	NA
UHGV-0087841_45	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0087841_45	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0087841_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0087841_45	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0087841_54	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0087841_57	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0087841_57	UniRef90	UniRef90_A0A8J6P944	Helix-turn-helix domain-containing protein	NA
UHGV-0087841_57	eggNOG-mapper	1121091.AUMP01000003_gene2580	transposase activity	NA
UHGV-0087841_57	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0087841_57	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0087841_57	Structural annotation	PF07141	NA	NA
UHGV-0087841_58	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087841_58	UniRef90	UniRef90_A0A075KJD6	Putative truncated GIY-YIG endonuclease	NA
UHGV-0087841_58	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-0087841_58	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0087841_58	Structural annotation	PF19835, PF07460, TIGR01453	NA	NA
UHGV-0087841_59	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0087841_59	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0087841_59	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0087841_59	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0087841_59	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0087841_59	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0087841_59	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0087841_59	COG	COG1783	Phage terminase large subunit	NA
UHGV-0087841_59	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0087841_60	PHROG	phrog_533	portal protein	head and packaging
UHGV-0087841_60	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0087841_60	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0087841_60	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0087841_61	PHROG	phrog_28673	tail protein	tail
UHGV-0087841_61	UniRef90	UniRef90_A0A1I0NKV5	Cell shape-determining protein MreC	NA
UHGV-0087841_61	eggNOG-mapper	515620.EUBELI_01505	NA	NA
UHGV-0087841_63	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0087841_63	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0087841_63	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0087841_63	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0087841_63	COG	COG2369	NA	NA
UHGV-0087841_63	Structural annotation	PF06152	NA	NA
UHGV-0087841_64	PHROG	phrog_3754	NA	unknown function
UHGV-0087841_64	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0087841_65	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0087841_65	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0087841_66	PHROG	phrog_21718	NA	unknown function
UHGV-0087841_66	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0087841_67	PHROG	phrog_22984	NA	unknown function
UHGV-0087841_68	PHROG	phrog_16490	NA	unknown function
UHGV-0087841_68	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0087841_69	PHROG	phrog_20016	NA	unknown function
UHGV-0087841_69	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0087841_69	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0087841_69	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0087841_70	PHROG	phrog_28802	NA	unknown function
UHGV-0087841_70	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0087841_71	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0087841_71	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0087841_71	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0087841_71	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20