UHGV-0087870

Genome information

Genome length 46,621 bps

CDS count 65

Completeness 99.90% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087870
vOTU ID	vOTU-070690
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_197051
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.7
Jumbo phage	No

Genome content
Genome length	46,621 bps
GC content	49.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.66%
Average CDS length	654.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087870_2	eggNOG-mapper	1449050.JNLE01000003_gene1729	NA	NA
UHGV-0087870_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0087870_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0087870_3	UniRef90	UniRef90_R6N1X8	DNA integration/recombination protein	NA
UHGV-0087870_3	eggNOG-mapper	903814.ELI_1010	Resolvase, N terminal domain	NA
UHGV-0087870_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0087870_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0087870_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0087870_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0087870_3	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0087870_4	UniRef90	UniRef90_A0A1C6L0N4	HTH cro/C1-type domain-containing protein	NA
UHGV-0087870_4	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0087870_7	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0087870_7	PHROG	phrog_19349	NA	unknown function
UHGV-0087870_7	UniRef90	UniRef90_R6N9M0	Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains)	NA
UHGV-0087870_7	eggNOG-mapper	428125.CLOLEP_03275	Transglycosylase SLT domain	NA
UHGV-0087870_7	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0087870_7	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0087870_7	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0087870_8	PHROG	phrog_37022	NA	unknown function
UHGV-0087870_8	eggNOG-mapper	1235792.C808_05392	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0087870_8	Structural annotation	NF005248	NA	NA
UHGV-0087870_9	PHROG	phrog_25485	NA	unknown function
UHGV-0087870_10	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0087870_10	UniRef90	UniRef90_D7GXC2	Archaeal holliday junction resolvase (Hjc)	NA
UHGV-0087870_10	eggNOG-mapper	1449050.JNLE01000003_gene3909	Recombination protein U	NA
UHGV-0087870_10	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-0087870_11	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0087870_11	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0087870_11	UniRef90	UniRef90_A0A849CVE0	DEAD/DEAH box helicase family protein	NA
UHGV-0087870_11	eggNOG-mapper	1449050.JNLE01000003_gene3908	Type III restriction protein res subunit	NA
UHGV-0087870_11	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0087870_11	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0087870_11	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0087870_11	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0087870_11	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0087870_12	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0087870_12	UniRef90	UniRef90_A0A849CVC4	DNA polymerase elongation subunit (Family B)	NA
UHGV-0087870_12	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0087870_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-0087870_12	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0087870_12	Structural annotation	PF04404, PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0087870_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087870_13	UniRef90	UniRef90_R6N9M4	Phage-related protein predicted endonuclease	NA
UHGV-0087870_13	eggNOG-mapper	1219626.HMPREF1639_07320	YqaJ viral recombinase family	NA
UHGV-0087870_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0087870_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0087870_13	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0087870_15	AcrCatalog	cluster_73853	NA	NA
UHGV-0087870_17	Structural annotation	PF05037	NA	NA
UHGV-0087870_18	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0087870_18	UniRef90	UniRef90_R6MZ55	NA	NA
UHGV-0087870_18	eggNOG-mapper	553217.ENHAE0001_2201	NA	NA
UHGV-0087870_18	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0087870_18	Structural annotation	PF18909	NA	NA
UHGV-0087870_19	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0087870_19	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0087870_19	UniRef90	UniRef90_A0A1C6EYG8	Predicted HD-superfamily hydrolase	NA
UHGV-0087870_19	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0087870_19	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0087870_19	Structural annotation	PF21447, MF_01427, NF010007, COG3481	NA	NA
UHGV-0087870_22	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0087870_23	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0087870_23	UniRef90	UniRef90_R6P545	Primase C terminal 1 (PriCT-1)./Bifunctional DNA primase/polymerase N-terminal	NA
UHGV-0087870_23	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0087870_23	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0087870_23	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0087870_23	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-0087870_24	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0087870_24	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0087870_24	UniRef90	UniRef90_A0A1C6L030	mRNA interferase EndoA	NA
UHGV-0087870_24	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-0087870_24	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0087870_24	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0087870_24	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0087870_25	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0087870_25	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0087870_25	UniRef90	UniRef90_R6MZ76	Flavin-dependent thymidylate synthase	NA
UHGV-0087870_25	eggNOG-mapper	665956.HMPREF1032_03153	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0087870_25	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0087870_25	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0087870_25	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0087870_25	HAMAP	MF_01408	Flavin-dependent thymidylate synthase [thyX]	NA
UHGV-0087870_25	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0087870_26	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0087870_26	UniRef90	UniRef90_A0A3R6E579	DNA cytosine methyltransferase	NA
UHGV-0087870_26	eggNOG-mapper	457398.HMPREF0326_03026	C-5 cytosine-specific DNA methylase	NA
UHGV-0087870_26	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0087870_27	PHROG	phrog_1233	NA	unknown function
UHGV-0087870_27	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0087870_30	PHROG	phrog_7134	NA	unknown function
UHGV-0087870_30	UniRef90	UniRef90_K9AVD5	Pathogenicity island protein	NA
UHGV-0087870_30	eggNOG-mapper	1229783.C273_11316	NA	NA
UHGV-0087870_30	Structural annotation	PF13601	NA	NA
UHGV-0087870_31	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0087870_31	UniRef90	UniRef90_A0A1C0AG55	DNA primase	NA
UHGV-0087870_31	eggNOG-mapper	431943.CKL_3236	Phage plasmid primase, P4 family	NA
UHGV-0087870_31	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0087870_31	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0087870_31	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0087870_31	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0087870_31	Structural annotation	PF08706, PF05272, PF02257, MF_00016, NF005477, COG3378	NA	NA
UHGV-0087870_32	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0087870_32	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0087870_32	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0087870_33	PHROG	phrog_4264	NA	unknown function
UHGV-0087870_37	PHROG	phrog_6244	NA	unknown function
UHGV-0087870_37	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0087870_39	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0087870_39	PHROG	phrog_95	integrase	integration and excision
UHGV-0087870_39	UniRef90	UniRef90_A0A1C6EX67	Transposon Tn3 resolvase	NA
UHGV-0087870_39	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0087870_39	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0087870_39	Pfam	PF07508	Recombinase	Recombinase
UHGV-0087870_39	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0087870_39	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0087870_40	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0087870_41	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0087870_41	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0087870_41	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0087870_41	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0087870_41	COG	COG5410	NA	NA
UHGV-0087870_41	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0087870_42	PHROG	phrog_64	portal protein	head and packaging
UHGV-0087870_42	UniRef90	UniRef90_R6P563	SPP1 family phage portal protein	NA
UHGV-0087870_42	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0087870_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0087870_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0087870_43	Structural annotation	PF06810	NA	NA
UHGV-0087870_44	PHROG	phrog_544	major head protein	head and packaging
UHGV-0087870_44	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-0087870_44	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0087870_44	Structural annotation	PF06673, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0087870_45	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0087870_45	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0087870_45	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0087870_45	Structural annotation	TIGR01560	NA	NA
UHGV-0087870_46	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0087870_47	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0087870_47	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0087870_48	eggNOG-mapper	1121333.JMLH01000047_gene1014	NA	NA
UHGV-0087870_48	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0087870_49	PHROG	phrog_158	major tail protein	tail
UHGV-0087870_49	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0087870_49	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0087870_49	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0087870_50	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0087870_50	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0087870_50	Pfam	PF16478	NA	DUF5055
UHGV-0087870_50	Structural annotation	PF16478	NA	NA
UHGV-0087870_51	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-0087870_52	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0087870_52	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0087870_52	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0087870_53	PHROG	phrog_1194	NA	unknown function
UHGV-0087870_53	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0087870_53	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0087870_54	PHROG	phrog_13879	NA	unknown function
UHGV-0087870_54	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0087870_54	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0087870_55	PHROG	phrog_18725	NA	unknown function
UHGV-0087870_55	eggNOG-mapper	1235800.C819_00473	NA	NA
UHGV-0087870_56	PHROG	phrog_1220	head protein	head and packaging
UHGV-0087870_57	PHROG	phrog_5302	tail protein	tail
UHGV-0087870_57	UniRef90	UniRef90_R6M197	Ig-like_bact domain-containing protein	NA
UHGV-0087870_57	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0087870_57	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0087870_57	Structural annotation	PF07210, PF13620, PF16893, NF040788, COG2512	NA	NA
UHGV-0087870_58	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0087870_58	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0087870_58	UniRef90	UniRef90_A0A849CV99	RNA-directed DNA polymerase	NA
UHGV-0087870_58	eggNOG-mapper	411470.RUMGNA_00249	COG COG3344 Retron-type reverse transcriptase	NA
UHGV-0087870_58	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0087870_58	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0087870_58	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0087870_58	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0087870_60	PHROG	phrog_30034	NA	unknown function
UHGV-0087870_60	UniRef90	UniRef90_A0A8D9UHK2	Chitin oligosaccharide deacetylase	NA
UHGV-0087870_60	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-0087870_60	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0087870_60	Structural annotation	PF14600	NA	NA
UHGV-0087870_61	PHROG	phrog_4105	NA	unknown function
UHGV-0087870_61	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0087870_62	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0087870_62	PHROG	phrog_20388	endolysin	lysis
UHGV-0087870_62	UniRef90	UniRef90_A0A401LDK7	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0087870_62	eggNOG-mapper	1203606.HMPREF1526_00582	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0087870_62	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0087870_62	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0087870_62	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0087870_63	PHROG	phrog_17876	NA	unknown function
UHGV-0087870_63	eggNOG-mapper	1226322.HMPREF1545_04026	NA	NA
UHGV-0087870_64	PHROG	phrog_6918	holin	lysis
UHGV-0087870_64	UniRef90	UniRef90_A0A849CVA3	Holin	NA
UHGV-0087870_64	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0087870_64	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0087870_64	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0087870_65	eggNOG-mapper	411483.FAEPRAA2165_00936	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA	NA
UHGV-0087870_65	Pfam	PF01668	SmpB protein	SmpB
UHGV-0087870_65	COG	COG0691	tmRNA-binding protein	NA