UHGV-0087972

Genome information

Genome length 37,096 bps

CDS count 74

Completeness 99.98% (high-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087972
vOTU ID	vOTU-010378
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_187595
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.14
Jumbo phage	No

Genome content
Genome length	37,096 bps
GC content	29.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	91.36%
Average CDS length	462.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087972_2	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-0087972_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087972_2	UniRef90	UniRef90_R6YGA8	Post-exponential-phase responses transcriptional regulator	NA
UHGV-0087972_2	eggNOG-mapper	1385510.N781_09875	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0087972_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0087972_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087972_2	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0087972_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087972_2	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0087972_5	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0087972_5	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0087972_5	UniRef90	UniRef90_R7M5C6	Peptidase M23	NA
UHGV-0087972_5	eggNOG-mapper	511680.BUTYVIB_00396	peptidase	NA
UHGV-0087972_5	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0087972_5	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0087972_5	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0087972_8	PHROG	phrog_881	holin	lysis
UHGV-0087972_8	UniRef90	UniRef90_A0A1I7JG50	Putative phage holin Dp-1	NA
UHGV-0087972_8	eggNOG-mapper	1140001.I571_01849	Putative phage holin Dp-1	NA
UHGV-0087972_8	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0087972_8	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0087972_10	Structural annotation	PF17900	NA	NA
UHGV-0087972_11	Structural annotation	PF03906	NA	NA
UHGV-0087972_12	PHROG	phrog_5668	tail fiber protein	tail
UHGV-0087972_12	eggNOG-mapper	573061.Clocel_0796	Phage minor structural protein	NA
UHGV-0087972_12	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0087972_12	COG	COG4926	Phage-related protein	NA
UHGV-0087972_15	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0087972_15	Structural annotation	PF05113, PF09327, NF033848, COG3500	NA	NA
UHGV-0087972_16	PHROG	phrog_1194	NA	unknown function
UHGV-0087972_16	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-0087972_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0087972_17	eggNOG-mapper	1280692.AUJL01000027_gene2150	phage tail tape measure protein	NA
UHGV-0087972_17	COG	COG1511	NA	NA
UHGV-0087972_17	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-0087972_18	PHROG	phrog_706	NA	unknown function
UHGV-0087972_18	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0087972_18	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0087972_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0087972_18	Structural annotation	PF06854	NA	NA
UHGV-0087972_20	PHROG	phrog_14275	NA	unknown function
UHGV-0087972_20	UniRef90	UniRef90_R6Y193	zinc_ribbon_2 domain-containing protein	NA
UHGV-0087972_20	eggNOG-mapper	1031288.AXAA01000044_gene1983	NA	NA
UHGV-0087972_20	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0087972_20	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0087972_20	Structural annotation	PF07233, NF038353, COG5633	NA	NA
UHGV-0087972_21	PHROG	phrog_3099	NA	unknown function
UHGV-0087972_21	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0087972_21	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-0087972_22	PHROG	phrog_3266	tail completion	connector
UHGV-0087972_22	UniRef90	UniRef90_UPI000DCF807F	chloramphenicol resistance protein	NA
UHGV-0087972_22	eggNOG-mapper	999411.HMPREF1092_03317	NA	NA
UHGV-0087972_22	Structural annotation	PF12691	NA	NA
UHGV-0087972_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0087972_23	UniRef90	UniRef90_A0A1G4WU41	Minor capsid protein	NA
UHGV-0087972_23	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-0087972_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0087972_23	Structural annotation	PF11114	NA	NA
UHGV-0087972_24	PHROG	phrog_3366	NA	unknown function
UHGV-0087972_24	eggNOG-mapper	632245.CLP_1651	NA	NA
UHGV-0087972_24	Pfam	PF20536	NA	DUF6751
UHGV-0087972_24	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0087972_25	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0087972_25	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0087972_26	PHROG	phrog_283	major head protein	head and packaging
UHGV-0087972_26	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0087972_26	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0087972_26	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0087972_26	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0087972_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0087972_27	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-0087972_27	eggNOG-mapper	1399941.U3PIU5_9CAUD	Phage minor structural protein GP20	NA
UHGV-0087972_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0087972_27	Structural annotation	PF06810	NA	NA
UHGV-0087972_28	Structural annotation	PF09871, TIGR00739, COG1862	NA	NA
UHGV-0087972_29	UniRef90	UniRef90_A0A4R4FEG5	NA	NA
UHGV-0087972_29	eggNOG-mapper	1200557.JHWV01000022_gene2459	NA	NA
UHGV-0087972_29	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-0087972_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0087972_30	UniRef90	UniRef90_R6YG84	CdiA_C domain-containing protein	NA
UHGV-0087972_30	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0087972_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0087972_30	Pfam	PF21814	NA	DUF6883
UHGV-0087972_30	COG	COG2369	NA	NA
UHGV-0087972_30	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0087972_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0087972_31	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-0087972_31	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0087972_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0087972_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0087972_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0087972_32	UniRef90	UniRef90_R6DVT6	Phage terminase large subunit PBSX family	NA
UHGV-0087972_32	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0087972_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0087972_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0087972_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0087972_32	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0087972_33	eggNOG-mapper	697303.Thewi_1140	NA	NA
UHGV-0087972_34	PHROG	phrog_1233	NA	unknown function
UHGV-0087972_34	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-0087972_34	Structural annotation	PF13058	NA	NA
UHGV-0087972_36	PHROG	phrog_1048	NA	unknown function
UHGV-0087972_36	UniRef90	UniRef90_UPI001D02F1DD	NA	NA
UHGV-0087972_36	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0087972_36	Pfam	PF11195	NA	DUF2829
UHGV-0087972_36	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0087972_36	Structural annotation	PF11195	NA	NA
UHGV-0087972_37	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0087972_44	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0087972_44	Structural annotation	PF01096	NA	NA
UHGV-0087972_45	Pfam	PF00847	AP2 domain	AP2
UHGV-0087972_46	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087972_46	UniRef90	UniRef90_UPI001CDC4992	alcohol dehydrogenase	NA
UHGV-0087972_46	eggNOG-mapper	357276.EL88_11255	NA	NA
UHGV-0087972_48	PHROG	phrog_1238	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UHGV-0087972_48	UniRef90	UniRef90_A0A7Z0EIA5	Rhodanese-related sulfurtransferase	NA
UHGV-0087972_48	eggNOG-mapper	33898.JRHJ01000076_gene397	NA	NA
UHGV-0087972_48	Structural annotation	TIGR01689	NA	NA
UHGV-0087972_50	PHROG	phrog_98	NA	unknown function
UHGV-0087972_50	UniRef90	UniRef90_UPI001D0B1EA9	YopX family protein	NA
UHGV-0087972_50	eggNOG-mapper	619693.HMPREF6745_2499	YopX protein	NA
UHGV-0087972_50	Pfam	PF09643	YopX protein	YopX
UHGV-0087972_50	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0087972_50	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0087972_52	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0087972_52	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-0087972_52	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-0087972_52	Pfam	PF06356	NA	DUF1064
UHGV-0087972_52	Structural annotation	PF06356	NA	NA
UHGV-0087972_53	Structural annotation	PF15188	NA	NA
UHGV-0087972_56	PHROG	phrog_1123	NA	unknown function
UHGV-0087972_56	UniRef90	UniRef90_A0A7X6P6Q9	DNA gyrase	NA
UHGV-0087972_56	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0087972_56	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-0087972_57	PHROG	phrog_9804	NA	unknown function
UHGV-0087972_57	UniRef90	UniRef90_A0A3P6JF27	Loader and inhibitor of phage G40P	NA
UHGV-0087972_57	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0087972_57	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0087972_57	Structural annotation	PF11417	NA	NA
UHGV-0087972_58	PHROG	phrog_9327	primosomal protein	DNA, RNA and nucleotide metabolism
UHGV-0087972_58	UniRef90	UniRef90_UPI001297E3E8	NA	NA
UHGV-0087972_58	eggNOG-mapper	927704.SELR_18440	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0087972_58	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0087972_60	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0087972_60	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0087972_60	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0087972_60	Structural annotation	PF05772	NA	NA
UHGV-0087972_61	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0087972_61	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0087972_61	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0087972_62	eggNOG-mapper	202752.JL53_03675	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0087972_62	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0087972_63	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0087972_63	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-0087972_63	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-0087972_63	Pfam	PF03837	RecT family	RecT
UHGV-0087972_63	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0087972_63	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0087972_63	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0087972_64	PHROG	phrog_674	NA	unknown function
UHGV-0087972_64	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0087972_64	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-0087972_64	Pfam	PF07083	NA	DUF1351
UHGV-0087972_64	Structural annotation	PF07083	NA	NA
UHGV-0087972_67	PHROG	phrog_3292	NA	unknown function
UHGV-0087972_67	UniRef90	UniRef90_A0A645J1Z1	KTSC domain-containing protein	NA
UHGV-0087972_67	eggNOG-mapper	666685.R2APBS1_2625	KTSC domain	NA
UHGV-0087972_67	Pfam	PF13619	KTSC domain	KTSC
UHGV-0087972_67	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0087972_67	Structural annotation	PF13619	NA	NA
UHGV-0087972_68	PHROG	phrog_4621	NA	unknown function
UHGV-0087972_68	eggNOG-mapper	1196322.A370_02090	NA	NA
UHGV-0087972_71	UniRef90	UniRef90_UPI00195A0A22	helix-turn-helix domain-containing protein	NA
UHGV-0087972_71	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087972_71	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087972_71	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0087972_72	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0087972_72	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0087972_72	UniRef90	UniRef90_A0A1Q6LHM3	HTH cro/C1-type domain-containing protein	NA
UHGV-0087972_72	eggNOG-mapper	997350.HMPREF9129_1691	PFAM Helix-turn-helix	NA
UHGV-0087972_72	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087972_72	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087972_72	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0087972_73	PHROG	phrog_87	metallo-protease	other
UHGV-0087972_73	UniRef90	UniRef90_A0A7X9HW64	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0087972_73	eggNOG-mapper	698758.AXY_01820	Zn peptidase	NA
UHGV-0087972_73	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0087972_73	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0087972_73	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0087972_74	KOfam	K14059	int; integrase	NA
UHGV-0087972_74	PHROG	phrog_1	integrase	integration and excision
UHGV-0087972_74	UniRef90	UniRef90_R6HDS7	Phage integrase	NA
UHGV-0087972_74	eggNOG-mapper	273068.TTE2127	Phage integrase family	NA
UHGV-0087972_74	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0087972_74	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0087972_74	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0087972_74	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA