UHGV-0087983

Genome information

Genome length 32,583 bps

CDS count 49

Completeness 99.90% (high-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087983
vOTU ID	vOTU-008223
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_187602
BioSample	SAMEA3449274
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.62
Jumbo phage	No

Genome content
Genome length	32,583 bps
GC content	58.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.94%
Average CDS length	622.78 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087983_1	UniRef90	UniRef90_W1I6W0	Uncultured bacterium plasmid pRGI01332	NA
UHGV-0087983_1	eggNOG-mapper	936550.HMPREF1492_0061	Plasmid replication protein	NA
UHGV-0087983_1	Pfam	PF01719	Plasmid replication protein	Rep_2
UHGV-0087983_1	Structural annotation	PF01719	NA	NA
UHGV-0087983_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0087983_4	PHROG	phrog_291	endolysin	lysis
UHGV-0087983_4	UniRef90	UniRef90_A0A1Y4GDT9	LysM domain-containing protein	NA
UHGV-0087983_4	eggNOG-mapper	445975.COLSTE_02142	CW_7 repeat	NA
UHGV-0087983_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0087983_4	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0087983_4	Pfam	PF01476	LysM domain	LysM
UHGV-0087983_4	COG	COG1388	LysM repeat	NA
UHGV-0087983_4	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0087983_5	UniRef90	UniRef90_A0A1Y4G4Q3	Peptidase_C39_2 domain-containing protein	NA
UHGV-0087983_5	eggNOG-mapper	1280698.AUJS01000108_gene579	Papain-like cysteine protease AvrRpt2	NA
UHGV-0087983_5	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0087983_5	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0087983_5	Structural annotation	PF03412, NF033920, COG3271	NA	NA
UHGV-0087983_6	PHROG	phrog_10091	holin	lysis
UHGV-0087983_6	UniRef90	UniRef90_A0A1Y4G372	Phage holin	NA
UHGV-0087983_6	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-0087983_6	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0087983_6	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0087983_6	COG	COG5546	NA	NA
UHGV-0087983_6	Structural annotation	COG5546	NA	NA
UHGV-0087983_8	PHROG	phrog_18593	NA	unknown function
UHGV-0087983_8	UniRef90	UniRef90_B6GDG6	Carbohydrate binding domain protein	NA
UHGV-0087983_8	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0087983_8	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0087983_8	Structural annotation	PF14600	NA	NA
UHGV-0087983_9	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0087983_9	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0087983_9	UniRef90	UniRef90_A0A1Y4G3H0	Reverse transcriptase domain-containing protein	NA
UHGV-0087983_9	eggNOG-mapper	445975.COLSTE_02147	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0087983_9	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0087983_9	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0087983_9	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0087983_9	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0087983_10	eggNOG-mapper	445975.COLSTE_02149	NA	NA
UHGV-0087983_10	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-0087983_11	UniRef90	UniRef90_A0A1Y4G3C0	NA	NA
UHGV-0087983_11	eggNOG-mapper	445975.COLSTE_02150	NA	NA
UHGV-0087983_11	Pfam	PF19789	NA	DUF6273
UHGV-0087983_11	Structural annotation	PF19789	NA	NA
UHGV-0087983_12	PHROG	phrog_19280	NA	unknown function
UHGV-0087983_12	UniRef90	UniRef90_A0A1Y4G926	BppU_N domain-containing protein	NA
UHGV-0087983_12	eggNOG-mapper	445975.COLSTE_02151	NA	NA
UHGV-0087983_12	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0087983_12	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0087983_13	eggNOG-mapper	445975.COLSTE_02152	NA	NA
UHGV-0087983_14	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0087983_14	UniRef90	UniRef90_A0A1Y4GBQ8	Prophage_tail domain-containing protein	NA
UHGV-0087983_14	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-0087983_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0087983_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0087983_14	COG	COG4926	Phage-related protein	NA
UHGV-0087983_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0087983_15	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0087983_15	UniRef90	UniRef90_B6GDH4	Putative phage tail component domain protein	NA
UHGV-0087983_15	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-0087983_15	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0087983_15	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0087983_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0087983_15	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0087983_16	PHROG	phrog_23464	NA	unknown function
UHGV-0087983_16	UniRef90	UniRef90_B6GDH5	TMP repeat protein	NA
UHGV-0087983_16	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-0087983_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0087983_16	Structural annotation	COG5280	NA	NA
UHGV-0087983_18	Structural annotation	PF12363	NA	NA
UHGV-0087983_19	PHROG	phrog_88	major tail protein	tail
UHGV-0087983_19	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-0087983_19	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-0087983_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0087983_19	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0087983_20	eggNOG-mapper	411473.RUMCAL_01153	NA	NA
UHGV-0087983_20	Structural annotation	PF05657	NA	NA
UHGV-0087983_21	UniRef90	UniRef90_UPI00082989AC	HK97 gp10 family phage protein	NA
UHGV-0087983_21	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0087983_22	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0087983_22	UniRef90	UniRef90_B6GDI0	Putative phage head-tail adaptor	NA
UHGV-0087983_22	eggNOG-mapper	1121423.JONT01000041_gene949	head-tail adaptor	NA
UHGV-0087983_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0087983_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0087983_23	PHROG	phrog_5223	neck protein	connector
UHGV-0087983_23	UniRef90	UniRef90_B6GDI1	Putative phage DNA packaging protein	NA
UHGV-0087983_23	eggNOG-mapper	1094508.Tsac_2423	NA	NA
UHGV-0087983_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0087983_23	Structural annotation	TIGR01560	NA	NA
UHGV-0087983_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0087983_24	UniRef90	UniRef90_A0A1Y4GBR5	Phage major capsid protein	NA
UHGV-0087983_24	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-0087983_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0087983_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0087983_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0087983_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0087983_25	KOfam	K06904	NA	NA
UHGV-0087983_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0087983_25	UniRef90	UniRef90_UPI00189D4AF0	HK97 family phage prohead protease	NA
UHGV-0087983_25	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0087983_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0087983_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0087983_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0087983_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0087983_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0087983_26	UniRef90	UniRef90_A0A4S2F4F4	Phage portal protein	NA
UHGV-0087983_26	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-0087983_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0087983_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0087983_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0087983_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0087983_27	UniRef90	UniRef90_R7DAX5	Putative phage terminase large subunit	NA
UHGV-0087983_27	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-0087983_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0087983_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0087983_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0087983_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0087983_28	PHROG	phrog_1066	NA	unknown function
UHGV-0087983_28	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0087983_28	Structural annotation	TIGR01558	NA	NA
UHGV-0087983_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0087983_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087983_29	UniRef90	UniRef90_R7D851	HNH endonuclease domain protein	NA
UHGV-0087983_29	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-0087983_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0087983_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0087983_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0087983_30	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-0087983_30	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0087983_31	PHROG	phrog_1828	NA	unknown function
UHGV-0087983_32	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0087983_32	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0087983_32	UniRef90	UniRef90_R7DAX0	dUTP diphosphatase	NA
UHGV-0087983_32	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0087983_32	Pfam	PF00692	dUTPase	dUTPase
UHGV-0087983_32	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0087983_32	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0087983_32	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0087983_33	Structural annotation	MF_01326_A, TIGR01080	NA	NA
UHGV-0087983_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0087983_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0087983_34	UniRef90	UniRef90_A0A1Y4GBS3	Single-stranded DNA-binding protein	NA
UHGV-0087983_34	eggNOG-mapper	445975.COLSTE_02172	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0087983_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0087983_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0087983_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0087983_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0087983_34	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0087983_35	PHROG	phrog_21723	NA	unknown function
UHGV-0087983_35	UniRef90	UniRef90_A0A0C2JIH8	30S ribosomal protein S13	NA
UHGV-0087983_35	eggNOG-mapper	445975.COLSTE_02174	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	NA
UHGV-0087983_35	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0087983_35	COG	COG0099	Ribosomal protein S13	NA
UHGV-0087983_35	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0087983_38	KOfam	K14059	int; integrase	NA
UHGV-0087983_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0087983_38	UniRef90	UniRef90_R7D9N8	Site-specific recombinase phage integrase family	NA
UHGV-0087983_38	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-0087983_38	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0087983_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0087983_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0087983_38	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0087983_42	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0087983_42	UniRef90	UniRef90_UPI000550874E	NA	NA
UHGV-0087983_42	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-0087983_42	Pfam	PF11753	NA	DUF3310
UHGV-0087983_43	PHROG	phrog_24658	NA	unknown function
UHGV-0087983_43	UniRef90	UniRef90_R7D8J1	Gp50	NA
UHGV-0087983_44	PHROG	phrog_24189	NA	unknown function
UHGV-0087983_44	UniRef90	UniRef90_R7D7E6	NA	NA
UHGV-0087983_44	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-0087983_44	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0087983_44	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-0087983_47	eggNOG-mapper	445975.COLSTE_02184	NA	NA