UHGV-0087985

Genome information

Genome length 36,686 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0087985
vOTU ID	vOTU-068813
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_169990
BioSample	SAMEA3136649
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.34
Jumbo phage	No

Genome content
Genome length	36,686 bps
GC content	43.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.60%
Average CDS length	644.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087985_1	UniRef90	UniRef90_A0A3E2WJH8	XRE family transcriptional regulator	NA
UHGV-0087985_1	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0087985_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0087985_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0087985_1	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0087985_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0087985_3	PHROG	phrog_14030	NA	unknown function
UHGV-0087985_3	UniRef90	UniRef90_A0A412ERJ4	NlpC/P60 domain-containing protein (Fragment)	NA
UHGV-0087985_3	eggNOG-mapper	1121115.AXVN01000006_gene2170	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0087985_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0087985_3	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0087985_3	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0087985_3	Structural annotation	PF01183, PF05382, NF003627, TIGR02219, COG3757	NA	NA
UHGV-0087985_4	PHROG	phrog_443	holin	lysis
UHGV-0087985_4	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0087985_4	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0087985_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0087985_4	Structural annotation	PF16945	NA	NA
UHGV-0087985_5	PHROG	phrog_937	hemolysin	other
UHGV-0087985_5	eggNOG-mapper	478749.BRYFOR_07561	NA	NA
UHGV-0087985_6	PHROG	phrog_16164	NA	unknown function
UHGV-0087985_6	eggNOG-mapper	641524.ADICYQ_1391	lipolytic protein G-D-S-L family	NA
UHGV-0087985_6	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0087985_7	PHROG	phrog_24267	NA	unknown function
UHGV-0087985_7	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0087985_7	COG	COG4675	Phage tail collar domain	NA
UHGV-0087985_7	Structural annotation	PF10651, NF040788, COG2372	NA	NA
UHGV-0087985_8	PHROG	phrog_13289	tail protein	tail
UHGV-0087985_8	UniRef90	UniRef90_A0A1Y4EZM1	Prophage_tail domain-containing protein	NA
UHGV-0087985_8	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0087985_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0087985_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0087985_8	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0087985_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0087985_9	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-0087985_9	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0087985_9	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0087985_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0087985_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0087985_10	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0087985_10	UniRef90	UniRef90_UPI001A9AEB2C	phage tail tape measure protein	NA
UHGV-0087985_10	eggNOG-mapper	411468.CLOSCI_00194	Phage tail tape measure protein, TP901 family	NA
UHGV-0087985_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0087985_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0087985_10	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0087985_12	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0087985_12	Structural annotation	PF11836	NA	NA
UHGV-0087985_13	PHROG	phrog_88	major tail protein	tail
UHGV-0087985_13	UniRef90	UniRef90_A0A3D1FL93	Phage tail protein	NA
UHGV-0087985_13	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0087985_13	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0087985_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0087985_14	UniRef90	UniRef90_R6FMT8	HK97 gp10 family phage protein	NA
UHGV-0087985_14	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0087985_14	Structural annotation	TIGR01725	NA	NA
UHGV-0087985_15	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0087985_15	Structural annotation	PF05657	NA	NA
UHGV-0087985_16	PHROG	phrog_19734	NA	unknown function
UHGV-0087985_16	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-0087985_16	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-0087985_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0087985_17	PHROG	phrog_2550	NA	unknown function
UHGV-0087985_17	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0087985_17	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-0087985_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0087985_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0087985_18	UniRef90	UniRef90_A0A143XZI6	Phage capsid family protein	NA
UHGV-0087985_18	eggNOG-mapper	1235798.C817_04585	phage major capsid protein, HK97 family	NA
UHGV-0087985_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0087985_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0087985_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0087985_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0087985_19	KOfam	K06904	NA	NA
UHGV-0087985_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0087985_19	UniRef90	UniRef90_A0A143Y1N9	Caudovirus prohead protease	NA
UHGV-0087985_19	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-0087985_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0087985_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0087985_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0087985_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0087985_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0087985_20	UniRef90	UniRef90_A0A3D1FM97	Phage portal protein	NA
UHGV-0087985_20	eggNOG-mapper	33035.JPJF01000039_gene271	Phage portal protein, HK97 family	NA
UHGV-0087985_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0087985_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0087985_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0087985_20	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0087985_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0087985_21	UniRef90	UniRef90_A0A3D1FL87	Terminase	NA
UHGV-0087985_21	eggNOG-mapper	1235798.C817_04582	Phage Terminase	NA
UHGV-0087985_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0087985_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0087985_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0087985_21	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0087985_22	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0087985_22	UniRef90	UniRef90_A0A1Y4FAU6	Terminase	NA
UHGV-0087985_22	eggNOG-mapper	1235798.C817_04581	Phage terminase, small subunit	NA
UHGV-0087985_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0087985_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0087985_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087985_24	UniRef90	UniRef90_A0A412UTE1	HNH endonuclease	NA
UHGV-0087985_24	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-0087985_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0087985_24	Structural annotation	TIGR02646	NA	NA
UHGV-0087985_25	UniRef90	UniRef90_A0A416J0I8	Chemotaxis protein	NA
UHGV-0087985_25	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0087985_25	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0087985_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0087985_27	UniRef90	UniRef90_A0A6L8XU66	RNA polymerase subunit sigma-70	NA
UHGV-0087985_27	eggNOG-mapper	1235798.C817_03486	NA	NA
UHGV-0087985_27	Structural annotation	PF02996	NA	NA
UHGV-0087985_28	PHROG	phrog_6568	NA	unknown function
UHGV-0087985_33	PHROG	phrog_12728	NA	unknown function
UHGV-0087985_33	UniRef90	UniRef90_A0A516KMW1	Putative membrane lipoprotein	NA
UHGV-0087985_33	eggNOG-mapper	742765.HMPREF9457_02125	NA	NA
UHGV-0087985_36	PHROG	phrog_15982	NA	unknown function
UHGV-0087985_36	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0087985_36	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-0087985_36	Pfam	PF12961	NA	DUF3850
UHGV-0087985_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0087985_36	Structural annotation	PF12961, PF11300, MF_00771, NF002615, COG2411	NA	NA
UHGV-0087985_37	PHROG	phrog_8470	NA	unknown function
UHGV-0087985_37	UniRef90	UniRef90_UPI001920BF2D	PcfJ domain-containing protein	NA
UHGV-0087985_37	eggNOG-mapper	610130.Closa_1108	PcfJ-like protein	NA
UHGV-0087985_37	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0087985_37	Structural annotation	PF14284	NA	NA
UHGV-0087985_38	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0087985_39	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0087985_39	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0087985_39	UniRef90	UniRef90_A0A173WRS0	Ribonuclease H	NA
UHGV-0087985_39	eggNOG-mapper	411459.RUMOBE_00952	RNase H	NA
UHGV-0087985_39	Pfam	PF00075	RNase H	RNase_H
UHGV-0087985_39	COG	COG0328	Ribonuclease HI	NA
UHGV-0087985_39	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0087985_40	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0087985_40	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0087985_40	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0087985_40	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0087985_49	UniRef90	UniRef90_A0A374JR06	DNA-binding protein	NA
UHGV-0087985_49	eggNOG-mapper	1226325.HMPREF1548_06746	NA	NA
UHGV-0087985_50	UniRef90	UniRef90_UPI0011068EFE	helix-turn-helix transcriptional regulator	NA
UHGV-0087985_50	eggNOG-mapper	1226325.HMPREF1548_06747	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0087985_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0087985_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0087985_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0087985_52	UniRef90	UniRef90_UPI001E3451E3	recombinase family protein	NA
UHGV-0087985_52	eggNOG-mapper	1235792.C808_00650	Resolvase, N terminal domain	NA
UHGV-0087985_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0087985_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0087985_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0087985_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0087985_52	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0087985_53	KOfam	K02003	ABC.CD.A; putative ABC transport system ATP-binding protein	NA
UHGV-0087985_53	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0087985_53	UniRef90	UniRef90_R5XKR1	ABC transporter domain-containing protein	NA
UHGV-0087985_53	eggNOG-mapper	1226325.HMPREF1548_05243	ABC transporter, ATP-binding protein	NA
UHGV-0087985_53	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0087985_53	COG	COG1136	ABC-type lipoprotein export system, ATPase component	NA