UHGV-0088031

Genome information

Genome length 52,447 bps

CDS count 91

Completeness 92.26% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088031
vOTU ID	vOTU-079060
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_200763
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.26% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.84
Jumbo phage	No

Genome content
Genome length	52,447 bps
GC content	36.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	91
CDS density	87.88%
Average CDS length	509.80 bps
tRNA count	3
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088031_1	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0088031_1	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0088031_1	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0088031_1	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0088031_1	Structural annotation	PF12706, MF_01818, NF041851, COG5212	NA	NA
UHGV-0088031_2	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0088031_6	PHROG	phrog_8684	NA	unknown function
UHGV-0088031_6	UniRef90	UniRef90_UPI001D033076	YopX family protein	NA
UHGV-0088031_6	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0088031_6	Pfam	PF09643	YopX protein	YopX
UHGV-0088031_6	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0088031_6	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0088031_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0088031_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0088031_7	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0088031_7	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0088031_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0088031_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0088031_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0088031_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0088031_7	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0088031_8	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0088031_9	PHROG	phrog_20593	NA	unknown function
UHGV-0088031_10	PHROG	phrog_19106	NA	unknown function
UHGV-0088031_10	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0088031_10	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0088031_10	Structural annotation	TIGR01453	NA	NA
UHGV-0088031_12	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0088031_12	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0088031_12	UniRef90	UniRef90_A0A379CFW4	Modification methylase DpnIIB	NA
UHGV-0088031_12	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0088031_12	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0088031_12	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0088031_12	COG	COG0863	DNA modification methylase	NA
UHGV-0088031_14	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0088031_14	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0088031_14	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-0088031_14	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0088031_15	PHROG	phrog_9804	NA	unknown function
UHGV-0088031_15	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-0088031_15	eggNOG-mapper	626523.GCWU000342_01038	Loader and inhibitor of phage G40P	NA
UHGV-0088031_15	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0088031_15	Structural annotation	PF11417	NA	NA
UHGV-0088031_18	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0088031_18	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0088031_18	eggNOG-mapper	658088.HMPREF0987_01415	Excisionase from transposon Tn916	NA
UHGV-0088031_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088031_18	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0088031_18	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0088031_18	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0088031_19	KOfam	K14059	int; integrase	NA
UHGV-0088031_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0088031_19	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-0088031_19	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-0088031_19	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0088031_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0088031_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0088031_19	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0088031_21	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0088031_21	Structural annotation	NF033819	NA	NA
UHGV-0088031_23	PHROG	phrog_16490	NA	unknown function
UHGV-0088031_23	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0088031_24	PHROG	phrog_20016	NA	unknown function
UHGV-0088031_24	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0088031_24	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0088031_24	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0088031_25	UniRef90	UniRef90_UPI001F10428A	NA	NA
UHGV-0088031_25	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0088031_25	Structural annotation	PF19891, NF041793, COG4877	NA	NA
UHGV-0088031_26	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088031_26	UniRef90	UniRef90_A0A0H3N242	Phage-related protein	NA
UHGV-0088031_26	eggNOG-mapper	673376.F2VHW3_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0088031_27	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0088031_28	PHROG	phrog_1233	NA	unknown function
UHGV-0088031_28	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-0088031_28	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0088031_28	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0088031_31	eggNOG-mapper	592031.GCWU000322_00057	NA	NA
UHGV-0088031_33	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0088031_33	UniRef90	UniRef90_A0A415M7P1	XRE family transcriptional regulator	NA
UHGV-0088031_33	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0088031_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0088031_33	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0088031_36	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0088031_36	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0088031_36	Structural annotation	PF16677	NA	NA
UHGV-0088031_37	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0088031_37	UniRef90	UniRef90_R7BGE2	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0088031_37	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0088031_37	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0088031_37	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0088031_37	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0088031_39	eggNOG-mapper	1397699.JNIS01000001_gene2447	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0088031_39	Structural annotation	PF07106, NF040642, COG3355	NA	NA
UHGV-0088031_40	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088031_40	UniRef90	UniRef90_A0A8D9PGN5	HNH endonuclease	NA
UHGV-0088031_40	eggNOG-mapper	349521.HCH_04433	endonuclease activity	NA
UHGV-0088031_40	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0088031_40	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0088031_40	Structural annotation	PF01844	NA	NA
UHGV-0088031_41	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0088031_41	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-0088031_41	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0088031_43	PHROG	phrog_28328	NA	unknown function
UHGV-0088031_45	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0088031_48	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0088031_48	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-0088031_48	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0088031_48	COG	COG5410	NA	NA
UHGV-0088031_48	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0088031_49	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0088031_49	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0088031_49	Structural annotation	PF02996	NA	NA
UHGV-0088031_50	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0088031_51	PHROG	phrog_64	portal protein	head and packaging
UHGV-0088031_51	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-0088031_51	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0088031_51	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0088031_51	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0088031_53	PHROG	phrog_544	major head protein	head and packaging
UHGV-0088031_53	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-0088031_53	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-0088031_53	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0088031_53	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0088031_54	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0088031_54	Structural annotation	PF21169	NA	NA
UHGV-0088031_55	eggNOG-mapper	476272.RUMHYD_01948	NA	NA
UHGV-0088031_56	PHROG	phrog_1863	NA	unknown function
UHGV-0088031_56	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0088031_57	PHROG	phrog_1129	holin	lysis
UHGV-0088031_57	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0088031_57	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0088031_57	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0088031_57	Structural annotation	PF06946	NA	NA
UHGV-0088031_58	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0088031_58	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0088031_59	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0088031_60	Structural annotation	PF05657	NA	NA
UHGV-0088031_61	eggNOG-mapper	1298920.KI911353_gene2652	NA	NA
UHGV-0088031_61	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0088031_63	PHROG	phrog_36112	NA	unknown function
UHGV-0088031_63	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0088031_63	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0088031_63	Structural annotation	PF16478	NA	NA
UHGV-0088031_65	PHROG	phrog_28918	NA	unknown function
UHGV-0088031_65	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0088031_65	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0088031_66	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-0088031_67	UniRef90	UniRef90_UPI001D0E5D20	CopG family transcriptional regulator	NA
UHGV-0088031_67	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-0088031_68	Structural annotation	PF07875	NA	NA
UHGV-0088031_69	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0088031_69	UniRef90	UniRef90_A0A8D9PG17	Prophage antirepressor	NA
UHGV-0088031_69	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-0088031_69	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0088031_69	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0088031_69	COG	COG3617	Prophage antirepressor	NA
UHGV-0088031_69	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-0088031_70	Structural annotation	PF08931	NA	NA
UHGV-0088031_71	PHROG	phrog_1194	NA	unknown function
UHGV-0088031_71	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0088031_71	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0088031_72	Structural annotation	PF07761	NA	NA
UHGV-0088031_73	PHROG	phrog_6616	tail protein	tail
UHGV-0088031_73	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0088031_73	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0088031_73	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0088031_73	COG	COG4926	Phage-related protein	NA
UHGV-0088031_73	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0088031_75	KOfam	K07273	acm; lysozyme	NA
UHGV-0088031_75	PHROG	phrog_6745	endolysin	lysis
UHGV-0088031_75	UniRef90	UniRef90_A0A1Q6KJN7	LysM domain-containing protein	NA
UHGV-0088031_75	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0088031_75	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0088031_75	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0088031_75	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0088031_76	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0088031_76	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0088031_76	UniRef90	UniRef90_UPI001D029144	transcriptional regulator	NA
UHGV-0088031_76	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-0088031_76	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0088031_76	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0088031_77	UniRef90	UniRef90_UPI001D0090A6	NA	NA
UHGV-0088031_77	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-0088031_77	Pfam	PF05339	NA	DUF739
UHGV-0088031_77	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0088031_77	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0088031_80	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0088031_80	UniRef90	UniRef90_A0A3D5LQU6	Toxin Bro	NA
UHGV-0088031_80	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0088031_80	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0088031_80	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0088031_80	COG	COG3617	Prophage antirepressor	NA
UHGV-0088031_80	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0088031_82	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0088031_82	Structural annotation	PF10552	NA	NA
UHGV-0088031_85	PHROG	phrog_26861	NA	unknown function
UHGV-0088031_85	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0088031_85	eggNOG-mapper	1235802.C823_04125	NA	NA
UHGV-0088031_85	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0088031_85	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0088031_85	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0088031_85	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0088031_87	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0088031_87	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088031_87	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0088031_87	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0088031_87	Pfam	PF13476	AAA domain	AAA_23
UHGV-0088031_87	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0088031_87	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0088031_89	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0088031_89	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0088031_89	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-0088031_89	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0088031_89	Pfam	PF03837	RecT family	RecT
UHGV-0088031_89	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0088031_89	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0088031_89	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0088031_90	PHROG	phrog_25456	NA	unknown function
UHGV-0088031_91	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0088031_91	UniRef90	UniRef90_A0A416JIG7	MBL fold metallo-hydrolase	NA
UHGV-0088031_91	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0088031_91	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0088031_91	dbAPIS	APIS001	NA	NA
UHGV-0088031_91	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA