UHGV-0088081

Genome information

Genome length 15,361 bps

CDS count 21

Completeness 80.76% (medium-quality)

geNomad score 0.9722

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088081
vOTU ID	vOTU-037286
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_199707
BioSample	SAMEA3449423
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9722
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.14
Jumbo phage	No

Genome content
Genome length	15,361 bps
GC content	41.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	96.05%
Average CDS length	703.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088081_4	PHROG	phrog_2150	terminase	head and packaging
UHGV-0088081_4	UniRef90	UniRef90_Q37897	DNA packaging protein	NA
UHGV-0088081_4	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0088081_4	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0088081_4	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0088081_5	KOfam	K20742	ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]	NA
UHGV-0088081_5	PHROG	phrog_1015	tail protein with lysin activity	tail
UHGV-0088081_5	UniRef90	UniRef90_A0A6G5YG97	NlpC/P60 domain-containing protein	NA
UHGV-0088081_5	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0088081_5	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0088081_5	Structural annotation	NF008096, COG0791	NA	NA
UHGV-0088081_6	Structural annotation	PF08931	NA	NA
UHGV-0088081_9	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0088081_10	PHROG	phrog_2038	upper collar connector	connector
UHGV-0088081_10	UniRef90	UniRef90_A0A5Q2WB79	Upper collar protein	NA
UHGV-0088081_10	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0088081_10	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0088081_10	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0088081_11	PHROG	phrog_2248	tail protein	tail
UHGV-0088081_11	UniRef90	UniRef90_A0A7S5V1W7	Major tail protein	NA
UHGV-0088081_11	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0088081_11	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0088081_11	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0088081_11	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0088081_12	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0088081_12	UniRef90	UniRef90_A0A345MZG3	Major head protein	NA
UHGV-0088081_12	eggNOG-mapper	10747.CAPSD_BPCP1	viral capsid	NA
UHGV-0088081_12	Structural annotation	PF06673, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0088081_14	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0088081_14	PHROG	phrog_35436	amidase	lysis
UHGV-0088081_14	UniRef90	UniRef90_UPI001959A1CC	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0088081_14	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0088081_14	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0088081_14	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0088081_14	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0088081_14	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0088081_15	PHROG	phrog_199	holin	lysis
UHGV-0088081_15	UniRef90	UniRef90_UPI001C595E0D	phage holin family protein	NA
UHGV-0088081_15	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0088081_15	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0088081_15	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0088081_15	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0088081_16	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0088081_16	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0088081_16	UniRef90	UniRef90_A0A355RJ67	DNA-directed DNA polymerase	NA
UHGV-0088081_16	eggNOG-mapper	12345.Q96206_BPGA1	nucleotide binding	NA
UHGV-0088081_16	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0088081_16	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0088081_17	Structural annotation	PF05435	NA	NA
UHGV-0088081_18	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0088081_18	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0088081_18	Structural annotation	PF17427	NA	NA
UHGV-0088081_19	Structural annotation	PF17548	NA	NA
UHGV-0088081_20	Structural annotation	PF10922	NA	NA