UHGV-0088254

Genome information

Genome length 39,107 bps

CDS count 47

Completeness 97.18% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088254
vOTU ID	vOTU-077640
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_178315
BioSample	SAMEA3449188
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	33
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.45
Jumbo phage	No

Genome content
Genome length	39,107 bps
GC content	50.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.96%
Average CDS length	775.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088254_1	KOfam	K20534	gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]	NA
UHGV-0088254_1	PHROG	phrog_841	GtrB-like O-antigen conversion	moron, auxiliary metabolic gene and host takeover
UHGV-0088254_1	UniRef90	UniRef90_A0A5U9WJW4	Glycosyl transferase family 2	NA
UHGV-0088254_1	eggNOG-mapper	469595.CSAG_01790	Glycosyl transferase family 2	NA
UHGV-0088254_1	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0088254_2	PHROG	phrog_4829	GtrC-like O-antigen conversion translocase	moron, auxiliary metabolic gene and host takeover
UHGV-0088254_2	UniRef90	UniRef90_UPI001C6508DF	glucosyltransferase domain-containing protein	NA
UHGV-0088254_2	eggNOG-mapper	29486.NJ56_15275	Glucosyl transferase GtrII	NA
UHGV-0088254_2	Pfam	PF14264	Glucosyl transferase GtrII	Glucos_trans_II
UHGV-0088254_2	Structural annotation	PF14264, TIGR03663, COG5305	NA	NA
UHGV-0088254_3	PHROG	phrog_38237	NA	unknown function
UHGV-0088254_3	UniRef90	UniRef90_UPI000C2227B2	phage tail protein	NA
UHGV-0088254_3	eggNOG-mapper	1115515.EV102420_06_00490	NA	NA
UHGV-0088254_3	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0088254_3	Structural annotation	PF03906	NA	NA
UHGV-0088254_4	PHROG	phrog_450	NA	unknown function
UHGV-0088254_4	UniRef90	UniRef90_A0A140RUV2	Anti-repressor protein	NA
UHGV-0088254_4	eggNOG-mapper	1327941.T1SA45_9CAUD	NA	NA
UHGV-0088254_5	PHROG	phrog_7892	NA	unknown function
UHGV-0088254_5	eggNOG-mapper	1327941.T1S9G2_9CAUD	NA	NA
UHGV-0088254_6	PHROG	phrog_684	virion structural protein	head and packaging
UHGV-0088254_6	UniRef90	UniRef90_A0A7D7F7T3	Structural protein	NA
UHGV-0088254_6	eggNOG-mapper	1327941.T1SAN2_9CAUD	NA	NA
UHGV-0088254_7	PHROG	phrog_1145	NA	unknown function
UHGV-0088254_7	UniRef90	UniRef90_A0A376JJA4	NA	NA
UHGV-0088254_7	eggNOG-mapper	1327941.T1SBI1_9CAUD	NA	NA
UHGV-0088254_8	PHROG	phrog_992	head protein	head and packaging
UHGV-0088254_8	UniRef90	UniRef90_A0A837FQY4	Bacteriophage protein	NA
UHGV-0088254_8	eggNOG-mapper	343516.Q287A0_9CAUD	NA	NA
UHGV-0088254_9	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0088254_9	eggNOG-mapper	1327941.T1SA42_9CAUD	NA	NA
UHGV-0088254_9	Structural annotation	PF07321, NF041271	NA	NA
UHGV-0088254_10	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0088254_10	UniRef90	UniRef90_Q858G2	Acetyltransferase	NA
UHGV-0088254_10	eggNOG-mapper	1327941.T1S9F9_9CAUD	NA	NA
UHGV-0088254_10	Structural annotation	PF13302, MF_02210, NF011709, COG1247	NA	NA
UHGV-0088254_11	PHROG	phrog_376	tail protein	tail
UHGV-0088254_11	UniRef90	UniRef90_A0A193GZ54	Putative head closure protein	NA
UHGV-0088254_11	eggNOG-mapper	215158.Q858G3_BPE15	NA	NA
UHGV-0088254_11	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0088254_12	PHROG	phrog_394	tail protein	tail
UHGV-0088254_12	UniRef90	UniRef90_Q858G4	Tail protein	NA
UHGV-0088254_12	eggNOG-mapper	1327941.T1SBI0_9CAUD	Pfam:Tube	NA
UHGV-0088254_12	Structural annotation	PF17212	NA	NA
UHGV-0088254_13	PHROG	phrog_825	NA	unknown function
UHGV-0088254_13	eggNOG-mapper	1115515.EV102420_06_00390	NA	NA
UHGV-0088254_13	Pfam	PF21628	Major coat protein-like	Gp10-like
UHGV-0088254_13	Structural annotation	PF21628	NA	NA
UHGV-0088254_14	PHROG	phrog_590	NA	unknown function
UHGV-0088254_14	eggNOG-mapper	517433.PanABDRAFT_3533	NA	NA
UHGV-0088254_15	PHROG	phrog_427	NA	unknown function
UHGV-0088254_15	eggNOG-mapper	1124654.G9L6C6_9CAUD	NA	NA
UHGV-0088254_15	Pfam	PF21190	Bbp16	Bbp16
UHGV-0088254_15	Structural annotation	PF21190, NF033675	NA	NA
UHGV-0088254_16	PHROG	phrog_212	major head protein	head and packaging
UHGV-0088254_16	UniRef90	UniRef90_A0A0M3F638	NA	NA
UHGV-0088254_16	eggNOG-mapper	1115515.EV102420_06_00360	NA	NA
UHGV-0088254_16	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0088254_16	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0088254_17	PHROG	phrog_458	protease	other
UHGV-0088254_17	UniRef90	UniRef90_A0A7L6E4F3	Peptidase	NA
UHGV-0088254_17	eggNOG-mapper	215158.Q858G9_BPE15	peptidase activity	NA
UHGV-0088254_18	PHROG	phrog_17779	NA	unknown function
UHGV-0088254_18	UniRef90	UniRef90_B7UGR6	Predicted protease	NA
UHGV-0088254_18	eggNOG-mapper	1414738.V5UPY1_9CAUD	NA	NA
UHGV-0088254_19	PHROG	phrog_528	NA	unknown function
UHGV-0088254_19	UniRef90	UniRef90_A0A0M3F6P5	NA	NA
UHGV-0088254_19	eggNOG-mapper	1327941.T1S9X5_9CAUD	NA	NA
UHGV-0088254_20	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0088254_20	UniRef90	UniRef90_Q858H1	Portal protein	NA
UHGV-0088254_20	eggNOG-mapper	1327941.T1SA38_9CAUD	Bacteriophage head to tail connecting protein	NA
UHGV-0088254_20	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0088254_20	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0088254_21	PHROG	phrog_831	NA	unknown function
UHGV-0088254_21	UniRef90	UniRef90_A0A069FLF3	NA	NA
UHGV-0088254_21	eggNOG-mapper	215158.Q858H2_BPE15	NA	NA
UHGV-0088254_22	PHROG	phrog_11049	NA	unknown function
UHGV-0088254_22	eggNOG-mapper	397945.Aave_1732	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0088254_23	PHROG	phrog_5902	NA	unknown function
UHGV-0088254_23	UniRef90	UniRef90_A0A7G9CEV4	Terminase	NA
UHGV-0088254_23	eggNOG-mapper	1327941.T1SBH8_9CAUD	NA	NA
UHGV-0088254_23	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0088254_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0088254_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0088254_24	UniRef90	UniRef90_E3PG28	Putative phage terminase, small subunit	NA
UHGV-0088254_24	eggNOG-mapper	215158.Q858H4_BPE15	Terminase small subunit	NA
UHGV-0088254_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0088254_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0088254_25	PHROG	phrog_536	transcriptional regulator	transcription regulation
UHGV-0088254_25	eggNOG-mapper	215158.Q858C6_BPE15	NA	NA
UHGV-0088254_26	PHROG	phrog_5525	NA	unknown function
UHGV-0088254_27	UniRef90	UniRef90_UPI001DD02537	NA	NA
UHGV-0088254_27	eggNOG-mapper	399742.Ent638_1020	NA	NA
UHGV-0088254_28	PHROG	phrog_250	NA	unknown function
UHGV-0088254_28	UniRef90	UniRef90_UPI0013F0B939	ead/Ea22-like family protein	NA
UHGV-0088254_28	eggNOG-mapper	220341.16502180	Ead/Ea22-like protein	NA
UHGV-0088254_28	Pfam	PF13935	Ead/Ea22-like protein	Ead_Ea22
UHGV-0088254_28	Structural annotation	PF13935	NA	NA
UHGV-0088254_30	PHROG	phrog_492	NA	unknown function
UHGV-0088254_30	UniRef90	UniRef90_UPI0015FB0386	eae-like domain protein	NA
UHGV-0088254_30	eggNOG-mapper	424716.B1GS42_9CAUD	NA	NA
UHGV-0088254_31	PHROG	phrog_18669	NA	unknown function
UHGV-0088254_31	UniRef90	UniRef90_A0A7W3FAP7	NA	NA
UHGV-0088254_31	eggNOG-mapper	1327941.T1SA60_9CAUD	endonuclease activity	NA
UHGV-0088254_31	Pfam	PF06356	NA	DUF1064
UHGV-0088254_31	Structural annotation	PF06356, MF_04160, NF033179, COG1591	NA	NA
UHGV-0088254_32	PHROG	phrog_109	P-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0088254_32	UniRef90	UniRef90_A0A6X8RNS8	Replication protein	NA
UHGV-0088254_32	eggNOG-mapper	1124654.G9L6A9_9CAUD	DNA replication initiation	NA
UHGV-0088254_32	Pfam	PF06992	Replication protein P	Phage_lambda_P
UHGV-0088254_32	Structural annotation	PF06992	NA	NA
UHGV-0088254_33	KOfam	K02317	dnaT; DNA replication protein DnaT	NA
UHGV-0088254_33	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0088254_33	UniRef90	UniRef90_B7UGT1	Predicted primosomal protein	NA
UHGV-0088254_33	eggNOG-mapper	343516.Q286X4_9CAUD	Helix-turn-helix domain	NA
UHGV-0088254_33	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0088254_33	Pfam	PF17948	DnaT DNA-binding domain	DnaT
UHGV-0088254_34	PHROG	phrog_1081	NA	unknown function
UHGV-0088254_34	eggNOG-mapper	1115515.EV102420_06_00160	NA	NA
UHGV-0088254_35	eggNOG-mapper	215158.Q858D6_BPE15	NA	NA
UHGV-0088254_35	Structural annotation	PF01381	NA	NA
UHGV-0088254_36	PHROG	phrog_13326	NA	unknown function
UHGV-0088254_36	UniRef90	UniRef90_T1S9Z0	Repressor	NA
UHGV-0088254_36	eggNOG-mapper	215158.Q858D7_BPE15	sequence-specific DNA binding	NA
UHGV-0088254_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088254_36	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0088254_37	PHROG	phrog_1376	NA	unknown function
UHGV-0088254_37	UniRef90	UniRef90_UPI001C0EC2ED	cell envelope biogenesis protein TolA	NA
UHGV-0088254_37	eggNOG-mapper	1344012.ATMI01000052_gene1962	NA	NA
UHGV-0088254_38	PHROG	phrog_856	NA	unknown function
UHGV-0088254_38	eggNOG-mapper	215158.Q858D9_BPE15	NA	NA
UHGV-0088254_38	Structural annotation	PF06064	NA	NA
UHGV-0088254_39	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0088254_39	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0088254_39	UniRef90	UniRef90_A0A837KEB3	Exodeoxyribonuclease VIII	NA
UHGV-0088254_39	eggNOG-mapper	1124654.G9L6A3_9CAUD	NA	NA
UHGV-0088254_39	Pfam	PF12684	NA	DUF3799
UHGV-0088254_39	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0088254_40	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0088254_40	UniRef90	UniRef90_A0A6Y5B0I1	Recombinase RecT	NA
UHGV-0088254_40	eggNOG-mapper	1327941.T1S9Y8_9CAUD	DNA metabolic process	NA
UHGV-0088254_40	Pfam	PF03837	RecT family	RecT
UHGV-0088254_40	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0088254_41	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-0088254_41	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-0088254_41	UniRef90	UniRef90_A0A4Z9MX30	AlpA family phage regulatory protein	NA
UHGV-0088254_41	eggNOG-mapper	343516.Q286Y1_9CAUD	NA	NA
UHGV-0088254_41	Pfam	PF05930	Prophage CP4-57 regulatory protein (AlpA)	Phage_AlpA
UHGV-0088254_41	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0088254_42	PHROG	phrog_868	transcriptional activator	transcription regulation
UHGV-0088254_42	UniRef90	UniRef90_A0A3K5YKB8	PerC family transcriptional regulator	NA
UHGV-0088254_42	eggNOG-mapper	215158.Q858E4_BPE15	PerC transcriptional activator	NA
UHGV-0088254_42	Pfam	PF06069	PerC transcriptional activator	PerC
UHGV-0088254_43	PHROG	phrog_874	NA	unknown function
UHGV-0088254_43	eggNOG-mapper	1282995.R9VWB9_9CAUD	NA	NA
UHGV-0088254_43	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0088254_44	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0088254_44	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0088254_44	UniRef90	UniRef90_A0A2J0PRK5	Adenine methylase	NA
UHGV-0088254_44	eggNOG-mapper	215158.Q858E6_BPE15	nucleobase-containing compound metabolic process	NA
UHGV-0088254_44	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0088254_44	Pfam	PF05063	MT-A70	MT-A70
UHGV-0088254_44	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0088254_45	PHROG	phrog_4701	NA	unknown function
UHGV-0088254_46	KOfam	K14059	int; integrase	NA
UHGV-0088254_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0088254_46	UniRef90	UniRef90_Q858E8	Integrase	NA
UHGV-0088254_46	eggNOG-mapper	1327941.T1SAN6_9CAUD	Pfam:Arm-DNA-bind_3	NA
UHGV-0088254_46	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0088254_46	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0088254_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0088254_46	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0088254_47	KOfam	K01951	guaA, GMPS; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]	NA
UHGV-0088254_47	PHROG	phrog_11956	NA	unknown function
UHGV-0088254_47	UniRef90	UniRef90_A4WD82	GMP synthase [glutamine-hydrolyzing]	NA
UHGV-0088254_47	eggNOG-mapper	469595.CSAG_02295	Catalyzes the synthesis of GMP from XMP	NA
UHGV-0088254_47	Pfam	PF00117	Glutamine amidotransferase class-I	GATase
UHGV-0088254_47	Pfam	PF02540	NAD synthase	NAD_synthase
UHGV-0088254_47	Pfam	PF00958	GMP synthase C terminal domain	GMP_synt_C
UHGV-0088254_47	NCBIFam	NF000848.0	glutamine-hydrolyzing GMP synthase	NA
UHGV-0088254_47	COG	COG0518	GMP synthase, glutamine amidotransferase domain	NA
UHGV-0088254_47	HAMAP	MF_00344	GMP synthase [glutamine-hydrolyzing] [guaA]	NA
UHGV-0088254_47	Structural annotation	PF00958, PF00117, PF06508, MF_00344, NF000848, COG0519, COG0518	NA	NA