UHGV-0088343

Genome information

Genome length 33,006 bps

CDS count 44

Completeness 70.18% (medium-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088343
vOTU ID	vOTU-036138
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_194019
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.85
Jumbo phage	No

Genome content
Genome length	33,006 bps
GC content	29.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.37%
Average CDS length	694.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088343_1	KOfam	K14059	int; integrase	NA
UHGV-0088343_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0088343_1	UniRef90	UniRef90_Q182K7	Integrase	NA
UHGV-0088343_1	eggNOG-mapper	272563.CD630_25190	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0088343_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0088343_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0088343_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0088343_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0088343_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0088343_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0088343_2	UniRef90	UniRef90_UPI001F1D4440	helix-turn-helix domain-containing protein	NA
UHGV-0088343_2	eggNOG-mapper	431943.CKL_3317	transcriptional regulator	NA
UHGV-0088343_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0088343_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088343_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0088343_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0088343_3	UniRef90	UniRef90_A0A0C7I454	DNA-binding protein	NA
UHGV-0088343_3	eggNOG-mapper	195103.CPF_1603	Helix-turn-helix XRE-family like proteins	NA
UHGV-0088343_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088343_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0088343_4	UniRef90	UniRef90_UPI0008DA0801	helix-turn-helix domain-containing protein	NA
UHGV-0088343_4	eggNOG-mapper	1211819.CALK01000037_gene19	Helix-turn-helix domain	NA
UHGV-0088343_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0088343_4	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0088343_4	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0088343_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0088343_6	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0088343_6	UniRef90	UniRef90_A0A069A0C9	Antirepressor, phage associated	NA
UHGV-0088343_6	eggNOG-mapper	1522092.A0A090D834_9CAUD	DNA binding	NA
UHGV-0088343_6	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0088343_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0088343_6	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0088343_7	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088343_7	UniRef90	UniRef90_W1XZM1	Homing nuclease	NA
UHGV-0088343_7	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0088343_7	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0088343_7	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0088343_7	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0088343_7	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0088343_7	Structural annotation	PF07463	NA	NA
UHGV-0088343_8	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088343_8	UniRef90	UniRef90_K4I2Z1	GIY-YIG domain-containing protein	NA
UHGV-0088343_8	eggNOG-mapper	1087482.M1EAA9_9CAUD	nucleic acid binding	NA
UHGV-0088343_8	PADLOC	HEase_00005	homing endonuclease	RM
UHGV-0088343_8	Pfam	PF19835	Putative endonuclease segE, GIY-YIG domain	SegE_GIY-YIG
UHGV-0088343_9	Structural annotation	PF06600	NA	NA
UHGV-0088343_11	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0088343_11	UniRef90	UniRef90_A0A8I2AQS3	Phage recombination protein Bet	NA
UHGV-0088343_11	eggNOG-mapper	272563.CD630_09170	Phage recombination protein Bet	NA
UHGV-0088343_11	Pfam	PF03837	RecT family	RecT
UHGV-0088343_11	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0088343_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0088343_11	Structural annotation	PF03837, PF16784, TIGR01913, COG3723	NA	NA
UHGV-0088343_13	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0088343_13	UniRef90	UniRef90_A0A1G9U265	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0088343_13	eggNOG-mapper	632245.CLP_1613	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0088343_13	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0088343_13	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0088343_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0088343_13	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-0088343_14	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0088343_14	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0088343_14	UniRef90	UniRef90_UPI001E4A7D4E	ATP-binding protein	NA
UHGV-0088343_14	eggNOG-mapper	350688.Clos_1054	PFAM IstB-like ATP binding protein	NA
UHGV-0088343_14	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0088343_14	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0088343_14	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0088343_15	KOfam	K03090	sigB; RNA polymerase sigma-B factor	NA
UHGV-0088343_15	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0088343_15	UniRef90	UniRef90_UPI001E3C185D	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0088343_15	eggNOG-mapper	483218.BACPEC_01684	Sigma-70 region 3	NA
UHGV-0088343_15	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0088343_15	Pfam	PF04539	Sigma-70 region 3	Sigma70_r3
UHGV-0088343_15	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0088343_15	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0088343_15	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0088343_15	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0088343_18	PHROG	phrog_824	NA	unknown function
UHGV-0088343_18	UniRef90	UniRef90_A0A1I3QHP0	VRR-NUC domain-containing protein	NA
UHGV-0088343_18	eggNOG-mapper	1291050.JAGE01000001_gene480	VRR_NUC	NA
UHGV-0088343_18	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0088343_18	Structural annotation	PF08774	NA	NA
UHGV-0088343_19	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088343_19	UniRef90	UniRef90_UPI0013DE4804	NUMOD4 domain-containing protein	NA
UHGV-0088343_19	eggNOG-mapper	935836.JAEL01000005_gene2715	NUMOD4 motif	NA
UHGV-0088343_19	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0088343_20	Structural annotation	PF09388	NA	NA
UHGV-0088343_21	Structural annotation	PF18129, MF_00369, NF002745, COG2139	NA	NA
UHGV-0088343_23	PHROG	phrog_6721	NA	unknown function
UHGV-0088343_23	UniRef90	UniRef90_A0A373Q5P7	HNHc domain-containing protein	NA
UHGV-0088343_23	eggNOG-mapper	478749.BRYFOR_08540	NA	NA
UHGV-0088343_23	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0088343_23	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0088343_23	Structural annotation	PF02796, PF07463, TIGR02170	NA	NA
UHGV-0088343_25	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0088343_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0088343_27	UniRef90	UniRef90_UPI0008D9EAA5	NA	NA
UHGV-0088343_27	eggNOG-mapper	1292035.H476_1023	sigma factor activity	NA
UHGV-0088343_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0088343_27	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0088343_28	PHROG	phrog_9079	NA	unknown function
UHGV-0088343_28	eggNOG-mapper	445973.CLOBAR_02450	NA	NA
UHGV-0088343_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0088343_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088343_29	UniRef90	UniRef90_A0A1I3QJN8	HNH endonuclease	NA
UHGV-0088343_29	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0088343_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0088343_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0088343_30	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088343_30	UniRef90	UniRef90_A0A173R8Z7	Group I intron endonuclease	NA
UHGV-0088343_30	eggNOG-mapper	476272.RUMHYD_01755	GIY-YIG type nucleases (URI domain)	NA
UHGV-0088343_30	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0088343_30	COG	COG3860	NA	NA
UHGV-0088343_30	Structural annotation	PF19835, PF07460, TIGR01453	NA	NA
UHGV-0088343_31	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0088343_31	UniRef90	UniRef90_UPI000A26C9C4	P27 family phage terminase small subunit	NA
UHGV-0088343_31	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0088343_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0088343_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0088343_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0088343_32	UniRef90	UniRef90_UPI0011061D03	terminase large subunit	NA
UHGV-0088343_32	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0088343_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0088343_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0088343_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0088343_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0088343_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0088343_33	UniRef90	UniRef90_UPI00148519DF	phage portal protein	NA
UHGV-0088343_33	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0088343_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0088343_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0088343_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0088343_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0088343_34	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0088343_34	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0088343_34	UniRef90	UniRef90_A0A1C5YER3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0088343_34	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0088343_34	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0088343_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0088343_34	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0088343_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0088343_35	UniRef90	UniRef90_UPI001107332E	phage major capsid protein	NA
UHGV-0088343_35	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0088343_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0088343_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0088343_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0088343_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0088343_36	PHROG	phrog_749	NA	unknown function
UHGV-0088343_36	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0088343_36	eggNOG-mapper	1450694.BTS2_0540	NA	NA
UHGV-0088343_37	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0088343_37	UniRef90	UniRef90_A0A1I3QJF5	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0088343_37	eggNOG-mapper	1220589.CD32_01710	NA	NA
UHGV-0088343_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0088343_37	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0088343_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0088343_38	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0088343_39	PHROG	phrog_5509	neck protein	connector
UHGV-0088343_39	eggNOG-mapper	1408823.AXUS01000025_gene2627	NA	NA
UHGV-0088343_39	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0088343_40	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-0088343_40	eggNOG-mapper	1121866.AUGK01000006_gene884	NA	NA
UHGV-0088343_40	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0088343_41	eggNOG-mapper	1121866.AUGK01000006_gene886	NA	NA
UHGV-0088343_42	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0088343_42	UniRef90	UniRef90_UPI0011074901	phage tail tape measure protein	NA
UHGV-0088343_42	eggNOG-mapper	86416.Clopa_0349	Phage-related minor tail protein	NA
UHGV-0088343_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0088343_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0088343_42	COG	COG1340	NA	NA
UHGV-0088343_42	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0088343_43	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0088343_43	UniRef90	UniRef90_A0A1I3QJ72	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-0088343_43	eggNOG-mapper	1499684.CCNP01000020_gene2277	Phage tail protein	NA
UHGV-0088343_43	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0088343_43	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0088343_43	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0088343_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0088343_43	Structural annotation	PF05709, PF18342, TIGR01633, NF040670, COG4722, COG4991	NA	NA
UHGV-0088343_44	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0088343_44	UniRef90	UniRef90_UPI001D1653FC	phage tail protein	NA
UHGV-0088343_44	eggNOG-mapper	1329516.JPST01000005_gene1273	Prophage endopeptidase tail	NA
UHGV-0088343_44	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0088343_44	COG	COG4926	Phage-related protein	NA
UHGV-0088343_44	Structural annotation	PF14594, PF08239, PF05382, TIGR01665, NF041850, NF033742, COG4926, COG4991, COG0791	NA	NA