UHGV-0088346

Genome information

Genome length 27,984 bps

CDS count 43

Completeness 66.36% (medium-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088346
vOTU ID	vOTU-042198
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_194023
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.95
Jumbo phage	No

Genome content
Genome length	27,984 bps
GC content	38.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	91.68%
Average CDS length	599.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088346_1	COG	COG1315	Flagellar assembly protein FapA, interacts with EIIAGlc	NA
UHGV-0088346_2	Structural annotation	PF21596	NA	NA
UHGV-0088346_3	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0088346_3	UniRef90	UniRef90_A0A410PZR1	Siphovirus Gp157 family protein	NA
UHGV-0088346_3	eggNOG-mapper	40522.A8ASN2_BPA50	Siphovirus Gp157	NA
UHGV-0088346_3	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0088346_3	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0088346_4	PHROG	phrog_14970	NA	unknown function
UHGV-0088346_4	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-0088346_4	eggNOG-mapper	1128398.Curi_c14240	double-strand break repair protein	NA
UHGV-0088346_4	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0088346_4	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0088346_5	PHROG	phrog_7566	NA	unknown function
UHGV-0088346_5	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0088346_6	PHROG	phrog_1389	NA	unknown function
UHGV-0088346_6	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0088346_6	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0088346_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0088346_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0088346_7	UniRef90	UniRef90_UPI0004AC739F	single-stranded DNA-binding protein	NA
UHGV-0088346_7	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-0088346_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0088346_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0088346_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0088346_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0088346_7	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0088346_8	PHROG	phrog_2113	NA	unknown function
UHGV-0088346_8	UniRef90	UniRef90_A0A847W0Y2	HTH domain-containing protein	NA
UHGV-0088346_8	eggNOG-mapper	1160721.RBI_II00485	NA	NA
UHGV-0088346_8	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0088346_9	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0088346_9	UniRef90	UniRef90_UPI0019608C6C	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0088346_9	eggNOG-mapper	565664.EFXG_01794	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0088346_9	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0088346_9	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0088346_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0088346_9	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0088346_10	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0088346_10	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0088346_10	UniRef90	UniRef90_A0A1C6HFV4	DNA replication protein	NA
UHGV-0088346_10	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0088346_10	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0088346_10	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0088346_10	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0088346_11	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0088346_11	eggNOG-mapper	411490.ANACAC_00802	NA	NA
UHGV-0088346_11	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0088346_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088346_13	PHROG	phrog_6802	NA	unknown function
UHGV-0088346_13	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-0088346_14	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0088346_14	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0088346_14	UniRef90	UniRef90_A0A1I1YTW5	dCTP deaminase, dUMP-forming	NA
UHGV-0088346_14	eggNOG-mapper	641107.CDLVIII_5566	Belongs to the dCTP deaminase family	NA
UHGV-0088346_14	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0088346_14	COG	COG0717	dCTP deaminase	NA
UHGV-0088346_14	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0088346_17	PHROG	phrog_924	NA	unknown function
UHGV-0088346_17	UniRef90	UniRef90_A0A6H1ZAY1	NA	NA
UHGV-0088346_17	Pfam	PF04448	NA	DUF551
UHGV-0088346_17	Structural annotation	NF041588	NA	NA
UHGV-0088346_18	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0088346_18	UniRef90	UniRef90_A0A4R4K9Y6	NA	NA
UHGV-0088346_18	eggNOG-mapper	1280689.AUJC01000003_gene948	NA	NA
UHGV-0088346_18	Pfam	PF12961	NA	DUF3850
UHGV-0088346_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0088346_18	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0088346_20	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0088346_20	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0088346_20	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0088346_20	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0088346_21	UniRef90	UniRef90_R7EVG2	Thymidylate synthase ThyX	NA
UHGV-0088346_21	eggNOG-mapper	1235793.C809_02394	NA	NA
UHGV-0088346_21	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0088346_21	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0088346_23	UniRef90	UniRef90_UPI001BB0884F	NA	NA
UHGV-0088346_23	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0088346_23	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0088346_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0088346_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0088346_24	UniRef90	UniRef90_A0A7Y0EES9	Terminase small subunit	NA
UHGV-0088346_24	eggNOG-mapper	1415774.U728_2926	Terminase Small Subunit	NA
UHGV-0088346_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0088346_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0088346_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0088346_25	PHROG	phrog_10250	NA	unknown function
UHGV-0088346_25	UniRef90	UniRef90_A0A6A8VHC1	PBSX family phage terminase large subunit	NA
UHGV-0088346_25	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-0088346_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0088346_25	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0088346_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0088346_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0088346_25	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0088346_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0088346_26	UniRef90	UniRef90_A0A3A4W1Z3	Phage portal protein	NA
UHGV-0088346_26	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0088346_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0088346_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0088346_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0088346_27	UniRef90	UniRef90_J5UHE6	Phage minor capsid protein 2	NA
UHGV-0088346_27	eggNOG-mapper	545697.HMPREF0216_02846	Phage minor capsid protein 2	NA
UHGV-0088346_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0088346_27	COG	COG2369	NA	NA
UHGV-0088346_27	Structural annotation	PF06152	NA	NA
UHGV-0088346_28	eggNOG-mapper	1121335.Clst_0388	NA	NA
UHGV-0088346_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0088346_29	UniRef90	UniRef90_UPI001651708C	phage scaffolding protein	NA
UHGV-0088346_29	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-0088346_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0088346_29	Structural annotation	PF06810	NA	NA
UHGV-0088346_30	PHROG	phrog_422	major head protein	head and packaging
UHGV-0088346_30	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0088346_30	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0088346_31	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0088346_31	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0088346_32	PHROG	phrog_3366	NA	unknown function
UHGV-0088346_32	Pfam	PF20536	NA	DUF6751
UHGV-0088346_32	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0088346_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0088346_33	UniRef90	UniRef90_UPI0005439C25	minor capsid protein	NA
UHGV-0088346_33	eggNOG-mapper	1151292.QEW_4532	Minor capsid protein	NA
UHGV-0088346_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0088346_33	Structural annotation	PF11114	NA	NA
UHGV-0088346_34	PHROG	phrog_3266	tail completion	connector
UHGV-0088346_34	UniRef90	UniRef90_UPI001178914F	chloramphenicol resistance protein	NA
UHGV-0088346_34	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0088346_34	Structural annotation	PF12691	NA	NA
UHGV-0088346_35	PHROG	phrog_3099	NA	unknown function
UHGV-0088346_35	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-0088346_35	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0088346_35	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0088346_36	PHROG	phrog_4450	NA	unknown function
UHGV-0088346_36	UniRef90	UniRef90_UPI0018986D97	AP endonuclease	NA
UHGV-0088346_36	eggNOG-mapper	545697.HMPREF0216_02856	NA	NA
UHGV-0088346_36	Pfam	PF20378	NA	DUF6673
UHGV-0088346_36	Structural annotation	PF20378	NA	NA
UHGV-0088346_37	PHROG	phrog_706	NA	unknown function
UHGV-0088346_37	UniRef90	UniRef90_UPI0006C2D934	bacteriophage Gp15 family protein	NA
UHGV-0088346_37	eggNOG-mapper	931276.Cspa_c07530	Bacteriophage Gp15 protein	NA
UHGV-0088346_37	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0088346_37	Structural annotation	PF06854	NA	NA
UHGV-0088346_38	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0088346_38	UniRef90	UniRef90_UPI001E5F056E	Ltp family lipoprotein	NA
UHGV-0088346_38	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0088346_38	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0088346_38	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0088346_38	Structural annotation	PF18933, PF02631, MF_02248, MF_01114, NF008627, NF001062, COG5435, COG2137	NA	NA
UHGV-0088346_39	KOfam	K19159	yefM; antitoxin YefM	NA
UHGV-0088346_39	PHROG	phrog_10078	NA	unknown function
UHGV-0088346_39	UniRef90	UniRef90_A0A2G2ME42	Antitoxin	NA
UHGV-0088346_39	eggNOG-mapper	1278306.KB906908_gene633	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0088346_39	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0088346_39	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0088346_39	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0088346_39	Structural annotation	PF02604, NF008499, COG2161	NA	NA
UHGV-0088346_40	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0088346_40	UniRef90	UniRef90_UPI00067EBDC6	phage tail tape measure protein	NA
UHGV-0088346_40	eggNOG-mapper	411461.DORFOR_01175	phage tail tape measure protein	NA
UHGV-0088346_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0088346_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0088346_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0088346_40	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0088346_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0088346_41	UniRef90	UniRef90_UPI00164AD3F2	phage tail family protein	NA
UHGV-0088346_41	eggNOG-mapper	1540257.JQMW01000013_gene730	Phage tail protein	NA
UHGV-0088346_41	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0088346_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0088346_41	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0088346_42	PHROG	phrog_538	minor tail protein	tail
UHGV-0088346_42	UniRef90	UniRef90_A0A8J6IQQ3	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0088346_42	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0088346_42	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0088346_42	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0088346_43	PHROG	phrog_1220	head protein	head and packaging
UHGV-0088346_43	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-0088346_43	Structural annotation	PF20747	NA	NA