UHGV-0088392

Genome information

Genome length 37,429 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088392
vOTU ID	vOTU-066602
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_177611
BioSample	SAMEA3449190
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.55
Jumbo phage	No

Genome content
Genome length	37,429 bps
GC content	57.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.63%
Average CDS length	527.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088392_3	PHROG	phrog_35892	NA	unknown function
UHGV-0088392_3	eggNOG-mapper	411473.RUMCAL_01341	Leucine rich repeats (6 copies)	NA
UHGV-0088392_3	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0088392_3	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0088392_3	COG	COG5492	NA	NA
UHGV-0088392_4	KOfam	K14059	int; integrase	NA
UHGV-0088392_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0088392_4	UniRef90	UniRef90_A0A3D1VH24	Site-specific integrase	NA
UHGV-0088392_4	eggNOG-mapper	742738.HMPREF9460_04031	Phage integrase family	NA
UHGV-0088392_4	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0088392_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0088392_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0088392_4	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0088392_5	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0088392_5	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0088392_5	UniRef90	UniRef90_A0A810Q7W6	HicB family protein	NA
UHGV-0088392_5	eggNOG-mapper	641112.ACOK01000116_gene2617	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0088392_5	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0088392_5	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0088392_5	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0088392_6	PHROG	phrog_3989	NA	unknown function
UHGV-0088392_6	UniRef90	UniRef90_UPI0003170388	BRCT domain-containing protein	NA
UHGV-0088392_6	eggNOG-mapper	1396418.BATQ01000120_gene3072	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	NA
UHGV-0088392_6	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0088392_6	Structural annotation	PF00533, NF004844	NA	NA
UHGV-0088392_7	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0088392_7	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0088392_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0088392_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0088392_8	UniRef90	UniRef90_UPI0015595971	helix-turn-helix domain-containing protein	NA
UHGV-0088392_8	eggNOG-mapper	1094508.Tsac_0848	Helix-turn-helix XRE-family like proteins	NA
UHGV-0088392_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088392_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0088392_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0088392_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0088392_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0088392_12	UniRef90	UniRef90_UPI001BB47897	helix-turn-helix domain-containing protein	NA
UHGV-0088392_12	eggNOG-mapper	693746.OBV_27490	sequence-specific DNA binding	NA
UHGV-0088392_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088392_12	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0088392_12	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0088392_13	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0088392_13	UniRef90	UniRef90_A0A3D4EJF0	XRE family transcriptional regulator	NA
UHGV-0088392_13	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0088392_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088392_13	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0088392_13	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0088392_15	UniRef90	UniRef90_UPI001C96492F	excisionase family DNA-binding protein	NA
UHGV-0088392_15	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0088392_15	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0088392_15	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0088392_15	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0088392_17	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0088392_19	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0088392_19	UniRef90	UniRef90_UPI001F3D92C2	helix-turn-helix domain-containing protein	NA
UHGV-0088392_19	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0088392_19	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0088392_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0088392_19	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0088392_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0088392_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0088392_20	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0088392_20	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0088392_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0088392_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0088392_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0088392_20	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0088392_21	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0088392_21	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0088392_21	UniRef90	UniRef90_A0A845R968	ParA family protein	NA
UHGV-0088392_21	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0088392_21	Pfam	PF13614	AAA domain	AAA_31
UHGV-0088392_21	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0088392_21	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0088392_22	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0088392_22	PHROG	phrog_27290	NA	unknown function
UHGV-0088392_22	UniRef90	UniRef90_G4L1G7	HTH cro/C1-type domain-containing protein	NA
UHGV-0088392_22	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0088392_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0088392_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0088392_22	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0088392_24	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088392_24	UniRef90	UniRef90_A0A329UES5	HNHc domain-containing protein	NA
UHGV-0088392_24	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0088392_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0088392_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0088392_24	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0088392_26	PHROG	phrog_3136	NA	unknown function
UHGV-0088392_26	UniRef90	UniRef90_A0A329TS47	ASCH domain-containing protein	NA
UHGV-0088392_26	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0088392_26	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0088392_27	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0088392_27	UniRef90	UniRef90_A0A810Q0N4	Methyltransferase	NA
UHGV-0088392_27	eggNOG-mapper	411461.DORFOR_01143	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0088392_27	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0088392_27	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0088392_27	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0088392_27	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0088392_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0088392_32	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-0088392_32	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0088392_33	UniRef90	UniRef90_UPI001D014F8E	cysteine-rich KTR domain-containing protein	NA
UHGV-0088392_33	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0088392_33	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0088392_33	Structural annotation	PF14205, COG4416	NA	NA
UHGV-0088392_34	UniRef90	UniRef90_R6M5E4	Prophage LambdaBa04 GP54	NA
UHGV-0088392_34	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0088392_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0088392_35	PHROG	phrog_1066	NA	unknown function
UHGV-0088392_35	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-0088392_35	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0088392_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0088392_36	UniRef90	UniRef90_UPI001D07C789	terminase large subunit	NA
UHGV-0088392_36	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0088392_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0088392_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0088392_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0088392_36	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0088392_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-0088392_37	UniRef90	UniRef90_A0A3B8U1I5	Phage portal protein	NA
UHGV-0088392_37	eggNOG-mapper	1203606.HMPREF1526_00980	Portal protein	NA
UHGV-0088392_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0088392_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0088392_37	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0088392_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0088392_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0088392_38	UniRef90	UniRef90_U4R420	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0088392_38	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0088392_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0088392_38	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0088392_38	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0088392_39	eggNOG-mapper	318464.IO99_13750	Phage major capsid protein, HK97 family	NA
UHGV-0088392_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0088392_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0088392_40	UniRef90	UniRef90_UPI0018AA1B7F	phage major capsid protein	NA
UHGV-0088392_40	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-0088392_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0088392_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0088392_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0088392_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0088392_41	PHROG	phrog_5223	neck protein	connector
UHGV-0088392_41	UniRef90	UniRef90_A8SKP1	Putative phage DNA packaging protein	NA
UHGV-0088392_41	eggNOG-mapper	411465.PEPMIC_00737	NA	NA
UHGV-0088392_41	Structural annotation	TIGR01560	NA	NA
UHGV-0088392_42	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0088392_42	UniRef90	UniRef90_A0A890FC27	Phage head closure protein	NA
UHGV-0088392_42	eggNOG-mapper	1121428.DESHY_20140___1	head-tail adaptor	NA
UHGV-0088392_42	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0088392_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0088392_43	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0088392_43	Structural annotation	PF05657	NA	NA
UHGV-0088392_44	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0088392_44	Structural annotation	TIGR01725	NA	NA
UHGV-0088392_45	PHROG	phrog_88	major tail protein	tail
UHGV-0088392_45	UniRef90	UniRef90_A0A174CNN5	Phage major tail protein, phi13 family	NA
UHGV-0088392_45	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0088392_45	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0088392_46	Structural annotation	PF11836	NA	NA
UHGV-0088392_47	PHROG	phrog_33680	NA	unknown function
UHGV-0088392_47	UniRef90	UniRef90_UPI00098F054B	phage tail protein	NA
UHGV-0088392_47	eggNOG-mapper	1408415.JHXL01000001_gene400	phage tail tape measure protein	NA
UHGV-0088392_47	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0088392_47	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0088392_48	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0088392_48	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0088392_48	eggNOG-mapper	1161901.I1TLF2_9CAUD	NA	NA
UHGV-0088392_48	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0088392_49	PHROG	phrog_26795	NA	unknown function
UHGV-0088392_49	eggNOG-mapper	796940.HMPREF9628_00133	NA	NA
UHGV-0088392_49	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0088392_50	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0088392_51	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0088392_53	PHROG	phrog_13589	NA	unknown function
UHGV-0088392_53	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0088392_54	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0088392_54	Structural annotation	PF07210, TIGR03000	NA	NA
UHGV-0088392_57	PHROG	phrog_30034	NA	unknown function
UHGV-0088392_57	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-0088392_57	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-0088392_59	PHROG	phrog_14030	NA	unknown function
UHGV-0088392_59	UniRef90	UniRef90_A0A316NTC6	PG_binding_1 domain-containing protein	NA
UHGV-0088392_59	eggNOG-mapper	1121115.AXVN01000051_gene809	NLP P60 protein	NA
UHGV-0088392_59	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0088392_59	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0088392_59	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0088392_59	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-0088392_60	PHROG	phrog_1863	NA	unknown function
UHGV-0088392_60	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0088392_61	PHROG	phrog_1129	holin	lysis
UHGV-0088392_61	UniRef90	UniRef90_UPI00189DD88C	phage holin family protein	NA
UHGV-0088392_61	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0088392_61	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0088392_61	Structural annotation	PF06946	NA	NA
UHGV-0088392_63	Structural annotation	NF010256	NA	NA