UHGV-0088399

Genome information

Genome length 25,167 bps

CDS count 39

Completeness 64.14% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088399
vOTU ID	vOTU-017218
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_177626
BioSample	SAMEA3449190
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.48
Jumbo phage	No

Genome content
Genome length	25,167 bps
GC content	52.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	97.43%
Average CDS length	633.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088399_2	UniRef90	UniRef90_A0A316R8G0	HTH cro/C1-type domain-containing protein	NA
UHGV-0088399_3	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0088399_6	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088399_6	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0088399_6	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0088399_8	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0088399_8	UniRef90	UniRef90_A0A174RC35	RecT family	NA
UHGV-0088399_8	eggNOG-mapper	1129145.H2BD49_9CAUD	DNA metabolic process	NA
UHGV-0088399_8	Pfam	PF03837	RecT family	RecT
UHGV-0088399_8	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0088399_10	PHROG	phrog_9804	NA	unknown function
UHGV-0088399_10	UniRef90	UniRef90_A0A6L5Y152	Inhibitor_G39P domain-containing protein	NA
UHGV-0088399_10	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0088399_10	AcrCatalog	cluster_137185	NA	NA
UHGV-0088399_10	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0088399_10	Structural annotation	PF11417	NA	NA
UHGV-0088399_11	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0088399_11	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0088399_11	UniRef90	UniRef90_R5YVN2	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0088399_11	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0088399_11	Pfam	PF00692	dUTPase	dUTPase
UHGV-0088399_11	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0088399_11	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0088399_20	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0088399_20	UniRef90	UniRef90_A0A1L8CM45	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0088399_20	eggNOG-mapper	994601.G9BW80_9CAUD	nucleic acid binding	NA
UHGV-0088399_20	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0088399_21	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088399_21	UniRef90	UniRef90_M4W6M2	Transcription factor	NA
UHGV-0088399_21	eggNOG-mapper	387344.LVIS_0713	NA	NA
UHGV-0088399_22	PHROG	phrog_5931	NA	unknown function
UHGV-0088399_22	eggNOG-mapper	35760.BCHO_0887	NA	NA
UHGV-0088399_23	PHROG	phrog_36767	NA	unknown function
UHGV-0088399_23	eggNOG-mapper	649747.HMPREF0083_01019	NA	NA
UHGV-0088399_23	Pfam	PF10049	NA	DUF2283
UHGV-0088399_23	Structural annotation	PF10049, COG5428	NA	NA
UHGV-0088399_24	Structural annotation	PF18812, COG2929	NA	NA
UHGV-0088399_25	Pfam	PF11950	NA	DUF3467
UHGV-0088399_26	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-0088399_26	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0088399_26	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0088399_28	PHROG	phrog_20388	endolysin	lysis
UHGV-0088399_28	UniRef90	UniRef90_UPI0018CC5E5E	phage tail tip lysozyme	NA
UHGV-0088399_28	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0088399_28	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0088399_28	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0088399_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0088399_28	Structural annotation	PF18013, PF01471, COG3409	NA	NA
UHGV-0088399_32	Structural annotation	PF21253, PF07210, NF038128, TIGR03000, COG2512	NA	NA
UHGV-0088399_33	PHROG	phrog_892	tail fiber protein	tail
UHGV-0088399_33	eggNOG-mapper	1408422.JHYF01000026_gene3527	nuclear chromosome segregation	NA
UHGV-0088399_33	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0088399_34	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0088399_34	eggNOG-mapper	1519439.JPJG01000011_gene54	NA	NA
UHGV-0088399_34	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0088399_35	Structural annotation	PF16677	NA	NA
UHGV-0088399_36	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0088399_36	Structural annotation	PF11650	NA	NA
UHGV-0088399_37	PHROG	phrog_1129	holin	lysis
UHGV-0088399_37	UniRef90	UniRef90_A0A0D8J2M2	Enolase	NA
UHGV-0088399_37	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0088399_37	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0088399_37	Structural annotation	PF06946	NA	NA
UHGV-0088399_38	PHROG	phrog_1863	NA	unknown function
UHGV-0088399_38	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0088399_39	UniRef90	UniRef90_K1S1E0	Gp7 (Fragment)	NA
UHGV-0088399_39	eggNOG-mapper	1430331.EP10_10365	NA	NA
UHGV-0088399_39	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1