UHGV-0088406

Genome information

Genome length 29,355 bps

CDS count 52

Completeness 66.43% (medium-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088406
vOTU ID	vOTU-030187
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_172180
BioSample	SAMEA3136642
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.5
Jumbo phage	No

Genome content
Genome length	29,355 bps
GC content	43.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	89.22%
Average CDS length	508.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088406_1	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0088406_1	PHROG	phrog_6700	endolysin	lysis
UHGV-0088406_1	UniRef90	UniRef90_A0A7U9SNK3	L-Ala--D-Glu endopeptidase	NA
UHGV-0088406_1	eggNOG-mapper	585394.RHOM_05320	COG0739 Membrane proteins related to metalloendopeptidases	NA
UHGV-0088406_1	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0088406_1	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0088406_3	eggNOG-mapper	1220589.CD32_01770	NA	NA
UHGV-0088406_3	AcrCatalog	cluster_38765	NA	NA
UHGV-0088406_3	Structural annotation	PF15931, NF001462, COG2974	NA	NA
UHGV-0088406_7	UniRef90	UniRef90_UPI001F475AD2	glutamyl-tRNA amidotransferase	NA
UHGV-0088406_8	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-0088406_8	COG	COG2369	NA	NA
UHGV-0088406_9	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0088406_9	UniRef90	UniRef90_UPI0018EE7F10	minor capsid protein	NA
UHGV-0088406_9	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0088406_9	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0088406_9	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0088406_9	COG	COG2369	NA	NA
UHGV-0088406_10	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0088406_10	UniRef90	UniRef90_UPI001D081B95	minor capsid protein	NA
UHGV-0088406_10	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0088406_10	COG	COG2369	NA	NA
UHGV-0088406_11	PHROG	phrog_1233	NA	unknown function
UHGV-0088406_11	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0088406_11	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0088406_12	PHROG	phrog_64	portal protein	head and packaging
UHGV-0088406_12	UniRef90	UniRef90_UPI001C01A84E	phage portal protein	NA
UHGV-0088406_12	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0088406_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0088406_12	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0088406_12	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0088406_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0088406_13	PHROG	phrog_10250	NA	unknown function
UHGV-0088406_13	UniRef90	UniRef90_UPI001C034ED9	PBSX family phage terminase large subunit	NA
UHGV-0088406_13	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0088406_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0088406_13	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0088406_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0088406_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0088406_13	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0088406_14	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0088406_14	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0088406_14	UniRef90	UniRef90_UPI001C01B209	terminase small subunit	NA
UHGV-0088406_14	eggNOG-mapper	642492.Clole_2766	Terminase Small Subunit	NA
UHGV-0088406_14	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0088406_14	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0088406_14	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0088406_14	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0088406_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0088406_15	UniRef90	UniRef90_UPI001C01EF14	RNA polymerase subunit sigma-70	NA
UHGV-0088406_15	eggNOG-mapper	1235798.C817_03486	NA	NA
UHGV-0088406_15	Structural annotation	PF02996	NA	NA
UHGV-0088406_17	UniRef90	UniRef90_UPI001C0249A7	ABC transporter ATP-binding protein	NA
UHGV-0088406_19	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0088406_19	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0088406_19	UniRef90	UniRef90_A0A1Q6JBY5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0088406_19	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0088406_19	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0088406_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0088406_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0088406_19	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0088406_20	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0088406_20	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0088406_20	UniRef90	UniRef90_UPI001C01F42B	DNA adenine methylase	NA
UHGV-0088406_20	eggNOG-mapper	411468.CLOSCI_00302	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0088406_20	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0088406_20	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0088406_20	COG	COG0338	DNA-adenine methylase	NA
UHGV-0088406_20	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0088406_21	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0088406_21	UniRef90	UniRef90_A0A316M8X6	PAPS_reduct domain-containing protein	NA
UHGV-0088406_21	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0088406_21	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0088406_21	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0088406_21	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0088406_23	PHROG	phrog_874	NA	unknown function
UHGV-0088406_23	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0088406_23	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0088406_24	PHROG	phrog_1571	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088406_24	UniRef90	UniRef90_A0A1Q9J7B4	HNHc domain-containing protein	NA
UHGV-0088406_24	eggNOG-mapper	702438.HMPREF9431_00759	HNH endonuclease	NA
UHGV-0088406_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0088406_24	Structural annotation	NF008448	NA	NA
UHGV-0088406_25	PHROG	phrog_20593	NA	unknown function
UHGV-0088406_27	PHROG	phrog_8684	NA	unknown function
UHGV-0088406_27	UniRef90	UniRef90_UPI001C0135E5	YopX family protein	NA
UHGV-0088406_27	eggNOG-mapper	742740.HMPREF9474_03496	YopX protein	NA
UHGV-0088406_27	Pfam	PF09643	YopX protein	YopX
UHGV-0088406_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0088406_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0088406_32	PHROG	phrog_15768	NA	unknown function
UHGV-0088406_32	UniRef90	UniRef90_UPI000E525AC6	NA	NA
UHGV-0088406_32	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-0088406_32	AcrCatalog	cluster_38323	NA	NA
UHGV-0088406_32	Pfam	PF19808	NA	DUF6291
UHGV-0088406_32	Structural annotation	PF19808	NA	NA
UHGV-0088406_33	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0088406_33	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0088406_33	UniRef90	UniRef90_A0A1Q6UYH5	Endodeoxyribonuclease RusA	NA
UHGV-0088406_33	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0088406_33	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0088406_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0088406_33	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0088406_34	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0088406_34	UniRef90	UniRef90_UPI001C016064	ORF6C domain-containing protein	NA
UHGV-0088406_34	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0088406_34	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0088406_34	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0088406_34	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0088406_34	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0088406_35	PHROG	phrog_7566	NA	unknown function
UHGV-0088406_35	UniRef90	UniRef90_UPI001C0181E7	phosphoenolpyruvate carboxykinase	NA
UHGV-0088406_35	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0088406_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0088406_36	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0088406_37	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0088406_37	UniRef90	UniRef90_UPI001C031D02	ERF family protein	NA
UHGV-0088406_37	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0088406_37	Pfam	PF04404	ERF superfamily	ERF
UHGV-0088406_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0088406_38	PHROG	phrog_4400	NA	unknown function
UHGV-0088406_40	PHROG	phrog_674	NA	unknown function
UHGV-0088406_40	UniRef90	UniRef90_UPI001C01FE50	NA	NA
UHGV-0088406_40	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0088406_40	Pfam	PF07083	NA	DUF1351
UHGV-0088406_40	Structural annotation	PF07083	NA	NA
UHGV-0088406_44	UniRef90	UniRef90_A0A414RMV5	Lectin-1	NA
UHGV-0088406_44	Structural annotation	COG3296	NA	NA
UHGV-0088406_46	PHROG	phrog_585	NA	unknown function
UHGV-0088406_46	UniRef90	UniRef90_UPI00077FE6A9	NA	NA
UHGV-0088406_46	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0088406_46	Pfam	PF10711	NA	DUF2513
UHGV-0088406_46	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0088406_48	UniRef90	UniRef90_UPI000E52936A	helix-turn-helix domain-containing protein	NA
UHGV-0088406_48	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0088406_48	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0088406_48	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0088406_49	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0088406_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0088406_49	UniRef90	UniRef90_R5ZAU1	Conserved domain protein	NA
UHGV-0088406_49	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-0088406_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088406_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0088406_49	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0088406_50	PHROG	phrog_87	metallo-protease	other
UHGV-0088406_50	UniRef90	UniRef90_A0A3R6K8Y6	Peptidase_M78 domain-containing protein	NA
UHGV-0088406_50	eggNOG-mapper	553973.CLOHYLEM_07298	IrrE N-terminal-like domain	NA
UHGV-0088406_50	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0088406_50	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0088406_51	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0088406_51	UniRef90	UniRef90_A0A3B9CG87	DNA-binding protein	NA
UHGV-0088406_51	eggNOG-mapper	476272.RUMHYD_02819	COG NOG08824 non supervised orthologous group	NA
UHGV-0088406_51	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0088406_51	Structural annotation	PF04383, NF033622, COG3943	NA	NA
UHGV-0088406_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0088406_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0088406_52	UniRef90	UniRef90_UPI001C00BC17	recombinase family protein	NA
UHGV-0088406_52	eggNOG-mapper	1232453.BAIF02000057_gene1119	Resolvase, N terminal domain	NA
UHGV-0088406_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0088406_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0088406_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0088406_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0088406_52	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA