UHGV-0088472

Genome information

Genome length 39,141 bps

CDS count 67

Completeness 96.91% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088472
vOTU ID	vOTU-014627
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_196880
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.88
Jumbo phage	No

Genome content
Genome length	39,141 bps
GC content	58.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	90.78%
Average CDS length	533.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088472_1	eggNOG-mapper	78346.BRUM_0425	NA	NA
UHGV-0088472_2	UniRef90	UniRef90_A0A076JPS5	Cell surface protein	NA
UHGV-0088472_2	eggNOG-mapper	1680.BADO_1275	NA	NA
UHGV-0088472_3	PHROG	phrog_87	metallo-protease	other
UHGV-0088472_3	UniRef90	UniRef90_UPI001E4081C5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0088472_3	eggNOG-mapper	398513.BBNG_00813	NA	NA
UHGV-0088472_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0088472_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0088472_4	UniRef90	UniRef90_A0A2K9BM35	NA	NA
UHGV-0088472_5	UniRef90	UniRef90_UPI000D5643C3	XRE family transcriptional regulator	NA
UHGV-0088472_5	eggNOG-mapper	78345.BMERY_0908	NA	NA
UHGV-0088472_5	Structural annotation	PF08667, MF_00535, NF041677, COG1476	NA	NA
UHGV-0088472_6	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0088472_6	UniRef90	UniRef90_A0A2K9BW34	HTH cro/C1-type domain-containing protein	NA
UHGV-0088472_6	eggNOG-mapper	78345.BMERY_0907	NA	NA
UHGV-0088472_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088472_6	Structural annotation	PF08667, MF_00535, NF041951, COG3093	NA	NA
UHGV-0088472_9	eggNOG-mapper	702459.BBPR_0888	NA	NA
UHGV-0088472_10	UniRef90	UniRef90_A0A6B8LJU6	Hypoyhetical protein	NA
UHGV-0088472_11	UniRef90	UniRef90_A0A413KAI3	DNA-binding protein	NA
UHGV-0088472_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0088472_11	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0088472_12	UniRef90	UniRef90_A0A6B8LMI6	Hypoyhetical protein	NA
UHGV-0088472_13	UniRef90	UniRef90_A0A072MRK2	Negative regulator of class I heat shock protein	NA
UHGV-0088472_13	Structural annotation	PF01047	NA	NA
UHGV-0088472_15	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088472_15	UniRef90	UniRef90_A0A564S1W6	YqaJ domain-containing protein	NA
UHGV-0088472_15	eggNOG-mapper	1437610.BREU_1416	YqaJ-like viral recombinase domain	NA
UHGV-0088472_15	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0088472_15	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0088472_15	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0088472_15	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0088472_16	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0088472_16	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0088472_16	UniRef90	UniRef90_A0A564S321	Protein RecT	NA
UHGV-0088472_16	eggNOG-mapper	1341695.BBOMB_1056	RecT family	NA
UHGV-0088472_16	Pfam	PF03837	RecT family	RecT
UHGV-0088472_16	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0088472_16	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0088472_16	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0088472_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0088472_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0088472_17	UniRef90	UniRef90_A0A413KAY2	Single-stranded DNA-binding protein	NA
UHGV-0088472_17	eggNOG-mapper	78346.BRUM_0409	Single-strand binding protein family	NA
UHGV-0088472_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0088472_17	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0088472_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0088472_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0088472_17	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0088472_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0088472_18	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0088472_18	UniRef90	UniRef90_A0A087BHA1	Gp53 family protein	NA
UHGV-0088472_18	eggNOG-mapper	78345.BMERY_0895	NA	NA
UHGV-0088472_18	Structural annotation	NF007305, COG4570	NA	NA
UHGV-0088472_19	UniRef90	UniRef90_UPI001076266F	transposase	NA
UHGV-0088472_19	eggNOG-mapper	1435051.BMOU_0784	NA	NA
UHGV-0088472_20	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0088472_20	UniRef90	UniRef90_A0A072N4W1	MazG domain-containing protein	NA
UHGV-0088472_20	eggNOG-mapper	1680.BADO_1259	NA	NA
UHGV-0088472_20	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0088472_20	Structural annotation	NF001611, COG1694	NA	NA
UHGV-0088472_21	PHROG	phrog_17296	NA	unknown function
UHGV-0088472_21	UniRef90	UniRef90_A0A7L8ZDC2	ADP-ribosyltransferase	NA
UHGV-0088472_21	eggNOG-mapper	1680.BADO_1261	NA	NA
UHGV-0088472_21	Structural annotation	PF12120, NF033144	NA	NA
UHGV-0088472_22	eggNOG-mapper	1394176.AWUO01000011_gene389	NA	NA
UHGV-0088472_22	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0088472_24	UniRef90	UniRef90_UPI001CFBB2F5	zinc ribbon domain-containing protein	NA
UHGV-0088472_25	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0088472_25	eggNOG-mapper	1435051.BMOU_0785	NA	NA
UHGV-0088472_25	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0088472_27	UniRef90	UniRef90_A0A412K9M9	Antitoxin	NA
UHGV-0088472_27	eggNOG-mapper	78346.BRUM_0403	NA	NA
UHGV-0088472_28	PHROG	phrog_908	NA	unknown function
UHGV-0088472_28	UniRef90	UniRef90_UPI001EF668C6	PhnA protein	NA
UHGV-0088472_28	eggNOG-mapper	78346.BRUM_0402	NA	NA
UHGV-0088472_28	Structural annotation	COG0789	NA	NA
UHGV-0088472_30	PHROG	phrog_226	minor tail protein	tail
UHGV-0088472_30	UniRef90	UniRef90_A0A3G3M4U7	Terminase small subunit	NA
UHGV-0088472_30	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-0088472_31	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0088472_31	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-0088472_31	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0088472_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0088472_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0088472_32	PHROG	phrog_104	portal protein	head and packaging
UHGV-0088472_32	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-0088472_32	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0088472_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0088472_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0088472_33	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0088472_33	UniRef90	UniRef90_A0A8A9ICF6	CdiA_C domain-containing protein	NA
UHGV-0088472_33	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-0088472_34	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0088472_34	UniRef90	UniRef90_UPI001115A562	NA	NA
UHGV-0088472_34	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-0088472_35	PHROG	phrog_212	major head protein	head and packaging
UHGV-0088472_35	UniRef90	UniRef90_UPI001038A13F	phage capsid protein	NA
UHGV-0088472_35	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-0088472_35	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0088472_36	PHROG	phrog_15682	NA	unknown function
UHGV-0088472_37	UniRef90	UniRef90_A0A072MRM0	Head protein	NA
UHGV-0088472_38	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0088472_38	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0088472_38	eggNOG-mapper	1437603.BMON_0136	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0088472_38	Pfam	PF09355	NA	Phage_Gp19
UHGV-0088472_38	Structural annotation	PF09355	NA	NA
UHGV-0088472_39	PHROG	phrog_13779	NA	unknown function
UHGV-0088472_39	UniRef90	UniRef90_UPI00192840F4	NA	NA
UHGV-0088472_39	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-0088472_39	Pfam	PF19586	NA	DUF6093
UHGV-0088472_39	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0088472_40	PHROG	phrog_19109	NA	unknown function
UHGV-0088472_40	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-0088472_40	Structural annotation	TIGR01725	NA	NA
UHGV-0088472_41	UniRef90	UniRef90_A0A3E5HKK5	Transcriptional regulator	NA
UHGV-0088472_41	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-0088472_41	Structural annotation	PF06141	NA	NA
UHGV-0088472_42	PHROG	phrog_2491	major tail protein	tail
UHGV-0088472_42	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-0088472_42	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-0088472_42	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-0088472_43	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-0088472_43	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-0088472_43	Structural annotation	PF08890	NA	NA
UHGV-0088472_44	UniRef90	UniRef90_A0A1X2YXV5	Terminase	NA
UHGV-0088472_44	eggNOG-mapper	398513.BBNG_00857	NA	NA
UHGV-0088472_45	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0088472_45	UniRef90	UniRef90_A0A3E5HJQ8	Phage tail tape measure protein	NA
UHGV-0088472_45	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-0088472_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0088472_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0088472_45	COG	COG5283	Phage-related tail protein	NA
UHGV-0088472_45	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0088472_46	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-0088472_46	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0088472_47	PHROG	phrog_538	minor tail protein	tail
UHGV-0088472_47	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-0088472_47	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0088472_47	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0088472_47	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0088472_49	PHROG	phrog_9994	NA	unknown function
UHGV-0088472_49	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0088472_49	Structural annotation	PF20747, PF08931	NA	NA
UHGV-0088472_51	eggNOG-mapper	1680.BADO_1227	NA	NA
UHGV-0088472_52	eggNOG-mapper	78345.BMERY_0866	NA	NA
UHGV-0088472_52	Structural annotation	PF08931	NA	NA
UHGV-0088472_53	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0088472_53	Structural annotation	PF08931	NA	NA
UHGV-0088472_54	eggNOG-mapper	1435051.BMOU_0220	NA	NA
UHGV-0088472_55	KOfam	K14059	int; integrase	NA
UHGV-0088472_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0088472_55	UniRef90	UniRef90_A0A173Y8E9	Phage integrase	NA
UHGV-0088472_55	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-0088472_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0088472_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0088472_55	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0088472_56	PHROG	phrog_28754	NA	unknown function
UHGV-0088472_56	UniRef90	UniRef90_A0A174BVV4	Tail type measure protein	NA
UHGV-0088472_56	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-0088472_56	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0088472_61	UniRef90	UniRef90_UPI001F0F3ADA	histidine kinase	NA
UHGV-0088472_62	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0088472_62	PHROG	phrog_14048	endolysin	lysis
UHGV-0088472_62	UniRef90	UniRef90_A0A072MS57	N-acetylmuramyl-L-alanine amidase	NA
UHGV-0088472_62	eggNOG-mapper	158787.BSCA_1068	Ami_2	NA
UHGV-0088472_62	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0088472_62	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0088472_62	Structural annotation	PF08460, PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0088472_63	UniRef90	UniRef90_A0A0A7I2K7	DoxX	NA
UHGV-0088472_63	eggNOG-mapper	1120979.ATVB01000037_gene1493	NA	NA
UHGV-0088472_64	UniRef90	UniRef90_UPI001BDD7678	PBECR4 domain-containing protein	NA
UHGV-0088472_64	Pfam	PF18813	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	PBECR4
UHGV-0088472_65	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0088472_65	UniRef90	UniRef90_K2H910	Gp28 phagic protein	NA
UHGV-0088472_65	eggNOG-mapper	158787.BSCA_1015	Transcriptional regulator	NA
UHGV-0088472_65	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0088472_65	Structural annotation	PF05930, NF033499, COG3311	NA	NA