UHGV-0088630

Genome information

Genome length 33,302 bps

CDS count 53

Completeness 85.49% (medium-quality)

geNomad score 0.9671

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088630
vOTU ID	vOTU-018937
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_181914
BioSample	SAMEA3449252
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9671
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.37
Jumbo phage	No

Genome content
Genome length	33,302 bps
GC content	41.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.84%
Average CDS length	581.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088630_1	KOfam	K14059	int; integrase	NA
UHGV-0088630_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0088630_1	UniRef90	UniRef90_UPI001EDF2E8E	tyrosine-type recombinase/integrase	NA
UHGV-0088630_1	eggNOG-mapper	908340.HMPREF9406_2610	Belongs to the 'phage' integrase family	NA
UHGV-0088630_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0088630_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0088630_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0088630_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0088630_4	UniRef90	UniRef90_UPI0012B3BE8E	helix-turn-helix domain-containing protein	NA
UHGV-0088630_4	eggNOG-mapper	908340.HMPREF9406_2608	Helix-turn-helix XRE-family like proteins	NA
UHGV-0088630_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088630_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0088630_4	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0088630_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0088630_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0088630_5	UniRef90	UniRef90_R6V1F0	HTH cro/C1-type domain-containing protein	NA
UHGV-0088630_5	eggNOG-mapper	999413.HMPREF1094_02044	Helix-turn-helix XRE-family like proteins	NA
UHGV-0088630_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0088630_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0088630_5	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0088630_12	PHROG	phrog_22529	NA	unknown function
UHGV-0088630_12	UniRef90	UniRef90_A0A6N2XEX9	3D domain protein	NA
UHGV-0088630_12	eggNOG-mapper	796942.HMPREF9623_00735	3D domain protein	NA
UHGV-0088630_12	Pfam	PF06725	3D domain	3D
UHGV-0088630_12	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0088630_12	Structural annotation	PF06725, COG3584	NA	NA
UHGV-0088630_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0088630_14	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0088630_14	eggNOG-mapper	999413.HMPREF1094_02028	NA	NA
UHGV-0088630_14	Structural annotation	PF21578	NA	NA
UHGV-0088630_15	UniRef90	UniRef90_A0A6N2XFT7	HTH cro/C1-type domain-containing protein	NA
UHGV-0088630_16	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0088630_16	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0088630_16	UniRef90	UniRef90_A0A099I637	PAPS_reduct domain-containing protein	NA
UHGV-0088630_16	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0088630_16	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0088630_16	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0088630_16	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0088630_17	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0088630_17	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0088630_17	UniRef90	UniRef90_A0A098AXA5	Phage-like N6 adenine-specific DNA methylase	NA
UHGV-0088630_17	eggNOG-mapper	931626.Awo_c35180	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0088630_17	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0088630_17	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0088630_17	COG	COG0338	DNA-adenine methylase	NA
UHGV-0088630_17	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0088630_18	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0088630_18	UniRef90	UniRef90_A0A7W4VFI6	L-amino acid N-acyltransferase YncA	NA
UHGV-0088630_18	eggNOG-mapper	411490.ANACAC_02385	COG NOG12663 non supervised orthologous group	NA
UHGV-0088630_18	Structural annotation	PF14236, MF_02210, NF007025, COG1247	NA	NA
UHGV-0088630_19	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0088630_19	UniRef90	UniRef90_H1BE95	NA	NA
UHGV-0088630_19	eggNOG-mapper	908340.HMPREF9406_2594	NA	NA
UHGV-0088630_19	Pfam	PF12961	NA	DUF3850
UHGV-0088630_23	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0088630_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0088630_23	UniRef90	UniRef90_A0A6N2XFP5	Tyrosine recombinase XerD	NA
UHGV-0088630_23	eggNOG-mapper	999413.HMPREF1094_02021	Phage integrase family	NA
UHGV-0088630_23	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0088630_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0088630_23	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0088630_23	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0088630_24	eggNOG-mapper	269482.Bcep1808_1151	NA	NA
UHGV-0088630_25	PHROG	phrog_38657	NA	unknown function
UHGV-0088630_30	UniRef90	UniRef90_A0A6N2XDS2	Sigma-70, region 4	NA
UHGV-0088630_30	eggNOG-mapper	1321779.HMPREF1984_01313	NA	NA
UHGV-0088630_30	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0088630_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088630_31	UniRef90	UniRef90_A0A414B846	HNH endonuclease	NA
UHGV-0088630_31	eggNOG-mapper	999413.HMPREF1094_02014	HNH nucleases	NA
UHGV-0088630_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0088630_31	Structural annotation	TIGR02646	NA	NA
UHGV-0088630_33	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0088630_33	UniRef90	UniRef90_A0A1Y4FAU6	Terminase	NA
UHGV-0088630_33	eggNOG-mapper	999413.HMPREF1094_02012	Phage terminase, small subunit	NA
UHGV-0088630_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0088630_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0088630_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0088630_34	UniRef90	UniRef90_G1VMM3	Phage terminase, large subunit	NA
UHGV-0088630_34	eggNOG-mapper	999413.HMPREF1094_02011	large subunit	NA
UHGV-0088630_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0088630_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0088630_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0088630_34	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0088630_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0088630_35	UniRef90	UniRef90_A0A099I918	Phage portal protein	NA
UHGV-0088630_35	eggNOG-mapper	999413.HMPREF1094_02010	Phage portal protein, HK97 family	NA
UHGV-0088630_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0088630_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0088630_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0088630_35	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0088630_36	KOfam	K06904	NA	NA
UHGV-0088630_36	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0088630_36	UniRef90	UniRef90_G1VMM5	Caudovirus prohead protease	NA
UHGV-0088630_36	eggNOG-mapper	999413.HMPREF1094_02009	Phage prohead protease, HK97 family	NA
UHGV-0088630_36	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0088630_36	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0088630_36	COG	COG3740	Phage head maturation protease	NA
UHGV-0088630_36	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0088630_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0088630_37	UniRef90	UniRef90_N9WI02	HK97 family phage major capsid protein	NA
UHGV-0088630_37	eggNOG-mapper	999413.HMPREF1094_02008	phage major capsid protein, HK97 family	NA
UHGV-0088630_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0088630_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0088630_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0088630_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0088630_38	PHROG	phrog_2550	NA	unknown function
UHGV-0088630_38	eggNOG-mapper	908340.HMPREF9406_2576	NA	NA
UHGV-0088630_39	PHROG	phrog_19734	NA	unknown function
UHGV-0088630_39	UniRef90	UniRef90_A0A3E5GR03	Head-tail adaptor protein	NA
UHGV-0088630_39	eggNOG-mapper	999413.HMPREF1094_02006	NA	NA
UHGV-0088630_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0088630_40	PHROG	phrog_78	tail terminator	connector
UHGV-0088630_40	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0088630_40	Structural annotation	PF05657	NA	NA
UHGV-0088630_41	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0088630_41	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0088630_41	Structural annotation	TIGR01725	NA	NA
UHGV-0088630_42	PHROG	phrog_88	major tail protein	tail
UHGV-0088630_42	UniRef90	UniRef90_N9WHZ7	Phi13 family phage major tail protein	NA
UHGV-0088630_42	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0088630_42	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0088630_42	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0088630_44	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0088630_44	PHROG	phrog_5218	NA	unknown function
UHGV-0088630_44	UniRef90	UniRef90_N9V933	PhageMin_Tail domain-containing protein	NA
UHGV-0088630_44	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0088630_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0088630_44	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0088630_44	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0088630_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0088630_45	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-0088630_45	eggNOG-mapper	999413.HMPREF1094_02000	phage tail	NA
UHGV-0088630_45	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0088630_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0088630_45	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0088630_46	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0088630_46	UniRef90	UniRef90_G1VMN5	Prophage_tail domain-containing protein	NA
UHGV-0088630_46	eggNOG-mapper	908340.HMPREF9406_2568	Phage minor structural protein	NA
UHGV-0088630_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0088630_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0088630_46	COG	COG4926	Phage-related protein	NA
UHGV-0088630_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0088630_47	UniRef90	UniRef90_UPI001E4F503F	collagen-like protein	NA
UHGV-0088630_47	eggNOG-mapper	908340.HMPREF9406_2567	NA	NA
UHGV-0088630_51	PHROG	phrog_443	holin	lysis
UHGV-0088630_51	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0088630_51	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0088630_51	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0088630_51	Structural annotation	PF16945	NA	NA
UHGV-0088630_52	PHROG	phrog_37604	NA	unknown function
UHGV-0088630_52	eggNOG-mapper	1123075.AUDP01000020_gene1531	NA	NA
UHGV-0088630_53	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0088630_53	PHROG	phrog_2742	endolysin	lysis
UHGV-0088630_53	UniRef90	UniRef90_UPI001E43C2E1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0088630_53	eggNOG-mapper	999413.HMPREF1094_01993	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0088630_53	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0088630_53	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA