UHGV-0088668

Genome information

Genome length 42,025 bps

CDS count 70

Completeness 100.00% (complete)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088668
vOTU ID	vOTU-002569
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_200072
BioSample	SAMEA3449221
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.59
Jumbo phage	No

Genome content
Genome length	42,025 bps
GC content	52.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	90.92%
Average CDS length	549.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088668_3	PHROG	phrog_60	NA	unknown function
UHGV-0088668_3	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-0088668_3	Pfam	PF04448	NA	DUF551
UHGV-0088668_3	Structural annotation	NF041588	NA	NA
UHGV-0088668_5	Structural annotation	PF19870, TIGR03188	NA	NA
UHGV-0088668_6	Structural annotation	PF03947, NF003076	NA	NA
UHGV-0088668_8	Pfam	PF20037	NA	DUF6440
UHGV-0088668_8	Structural annotation	PF20037	NA	NA
UHGV-0088668_10	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0088668_10	Structural annotation	NF040595	NA	NA
UHGV-0088668_11	PADLOC	cluster3	Csf1_0_IV	CRISPR-CAS
UHGV-0088668_11	Structural annotation	TIGR03114	NA	NA
UHGV-0088668_12	PADLOC	icity0121	Putative small subunit of type IV - was DinG	CRISPR-CAS
UHGV-0088668_13	PHROG	phrog_22746	NA	unknown function
UHGV-0088668_13	eggNOG-mapper	107636.JQNK01000009_gene1999	crispr-associated protein	NA
UHGV-0088668_13	PADLOC	cluster1	Csf2_0_IV	CRISPR-CAS
UHGV-0088668_13	Pfam	PF03787	RAMP superfamily	RAMPs
UHGV-0088668_13	COG	COG1857	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	NA
UHGV-0088668_13	Structural annotation	PF01905, TIGR03115, COG1604	NA	NA
UHGV-0088668_14	PHROG	phrog_34599	NA	unknown function
UHGV-0088668_14	UniRef90	UniRef90_A0A7W0HHE7	CRISPR type IV-associated protein Csf3	NA
UHGV-0088668_14	eggNOG-mapper	1268303.RHODMAR_4878	NA	NA
UHGV-0088668_14	PADLOC	cluster2	Csf3_0_IV	CRISPR-CAS
UHGV-0088668_14	Structural annotation	PF09704, TIGR03116, COG1604	NA	NA
UHGV-0088668_15	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0088668_15	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0088668_15	UniRef90	UniRef90_A0A6S6XHM1	PAPS_reduct domain-containing protein	NA
UHGV-0088668_15	eggNOG-mapper	1268303.RHODMAR_4883	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0088668_15	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0088668_15	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0088668_15	Structural annotation	PF01507, MF_00064, NF006327, COG3969	NA	NA
UHGV-0088668_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0088668_16	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0088668_17	PHROG	phrog_21498	NA	unknown function
UHGV-0088668_17	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0088668_17	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0088668_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0088668_17	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0088668_19	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0088668_19	UniRef90	UniRef90_A0A8J6P944	Helix-turn-helix domain-containing protein	NA
UHGV-0088668_19	eggNOG-mapper	693746.OBV_18020	transposase activity	NA
UHGV-0088668_19	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0088668_19	Structural annotation	PF07141	NA	NA
UHGV-0088668_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0088668_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0088668_20	UniRef90	UniRef90_UPI001412C9CB	PBSX family phage terminase large subunit	NA
UHGV-0088668_20	eggNOG-mapper	1292035.H476_1019	Phage terminase large subunit	NA
UHGV-0088668_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0088668_20	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0088668_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0088668_21	UniRef90	UniRef90_UPI000412491D	phage portal protein	NA
UHGV-0088668_21	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0088668_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0088668_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0088668_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0088668_22	UniRef90	UniRef90_A0A417EY47	Minor capsid protein	NA
UHGV-0088668_22	eggNOG-mapper	1120998.AUFC01000030_gene2233	NA	NA
UHGV-0088668_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0088668_22	COG	COG2369	NA	NA
UHGV-0088668_22	Structural annotation	PF06152	NA	NA
UHGV-0088668_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0088668_23	UniRef90	UniRef90_A0A1V6AXQ8	Phage minor structural protein GP20	NA
UHGV-0088668_23	eggNOG-mapper	1007103.AFHW01000034_gene2056	NA	NA
UHGV-0088668_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0088668_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0088668_24	UniRef90	UniRef90_UPI00040DB95C	phage major capsid protein	NA
UHGV-0088668_24	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-0088668_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0088668_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0088668_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0088668_24	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0088668_25	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0088668_26	PHROG	phrog_3366	NA	unknown function
UHGV-0088668_26	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0088668_26	Pfam	PF20536	NA	DUF6751
UHGV-0088668_26	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0088668_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0088668_27	UniRef90	UniRef90_UPI001958E7C1	minor capsid protein	NA
UHGV-0088668_27	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0088668_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0088668_27	Structural annotation	PF11114	NA	NA
UHGV-0088668_28	PHROG	phrog_3266	tail completion	connector
UHGV-0088668_28	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0088668_28	Structural annotation	PF12691	NA	NA
UHGV-0088668_29	PHROG	phrog_3099	NA	unknown function
UHGV-0088668_29	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0088668_29	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0088668_30	UniRef90	UniRef90_UPI000C077B54	NA	NA
UHGV-0088668_30	eggNOG-mapper	1405498.SSIM_01370	NA	NA
UHGV-0088668_30	Pfam	PF16729	NA	DUF5067
UHGV-0088668_30	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0088668_30	Structural annotation	PF16729, PF12773, MF_00791, TIGR04087, COG2967	NA	NA
UHGV-0088668_31	eggNOG-mapper	1280696.ATVY01000086_gene2001	NA	NA
UHGV-0088668_31	Pfam	PF08271	TFIIB zinc-binding	TF_Zn_Ribbon
UHGV-0088668_32	PHROG	phrog_11299	NA	unknown function
UHGV-0088668_32	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-0088668_32	Structural annotation	PF10666	NA	NA
UHGV-0088668_33	PHROG	phrog_706	NA	unknown function
UHGV-0088668_33	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0088668_33	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-0088668_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0088668_33	Structural annotation	PF06854	NA	NA
UHGV-0088668_34	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0088668_34	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0088668_34	COG	COG1511	NA	NA
UHGV-0088668_35	PHROG	phrog_1194	NA	unknown function
UHGV-0088668_35	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0088668_35	Pfam	PF20458	NA	DUF6711
UHGV-0088668_35	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0088668_36	PHROG	phrog_18190	NA	unknown function
UHGV-0088668_36	UniRef90	UniRef90_UPI00143A35E2	tail fiber domain-containing protein	NA
UHGV-0088668_36	eggNOG-mapper	1449050.JNLE01000003_gene3879	NA	NA
UHGV-0088668_36	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0088668_42	KOfam	K19303	mepH; murein DD-endopeptidase [EC:3.4.-.-]	NA
UHGV-0088668_42	PHROG	phrog_329	minor tail protein	tail
UHGV-0088668_42	UniRef90	UniRef90_A0A2V2EEK9	NlpC/P60 domain-containing protein	NA
UHGV-0088668_42	eggNOG-mapper	357809.Cphy_0799	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0088668_42	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0088668_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0088668_42	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0088668_42	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0088668_43	UniRef90	UniRef90_UPI001E4D989F	CTP synthase	NA
UHGV-0088668_43	eggNOG-mapper	552396.HMPREF0863_01650	NA	NA
UHGV-0088668_44	eggNOG-mapper	394503.Ccel_1297	NA	NA
UHGV-0088668_46	UniRef90	UniRef90_W1I3U4	Uncultured bacterium extrachromosomal DNA RGI00970	NA
UHGV-0088668_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088668_48	Structural annotation	PF21291, TIGR02607, COG3093	NA	NA
UHGV-0088668_49	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0088668_51	PHROG	phrog_16490	NA	unknown function
UHGV-0088668_52	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0088668_54	KOfam	K14059	int; integrase	NA
UHGV-0088668_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0088668_54	UniRef90	UniRef90_UPI001C0F402D	site-specific integrase	NA
UHGV-0088668_54	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0088668_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0088668_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0088668_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0088668_54	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0088668_55	UniRef90	UniRef90_A0A354UMM3	HTH cro/C1-type domain-containing protein	NA
UHGV-0088668_55	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0088668_55	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0088668_56	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0088668_56	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0088668_56	UniRef90	UniRef90_E6U4C1	Helix-turn-helix domain protein	NA
UHGV-0088668_56	eggNOG-mapper	663278.Ethha_2212	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0088668_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088668_56	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0088668_56	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0088668_57	UniRef90	UniRef90_UPI0019671B18	transcriptional regulator	NA
UHGV-0088668_57	Pfam	PF05339	NA	DUF739
UHGV-0088668_57	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0088668_57	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0088668_61	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0088668_61	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0088668_65	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088668_65	UniRef90	UniRef90_A0A1Y4W4B5	YqaJ domain-containing protein	NA
UHGV-0088668_65	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0088668_65	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0088668_65	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0088668_65	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0088668_65	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0088668_66	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0088668_66	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0088668_66	UniRef90	UniRef90_UPI0018C50A8E	recombinase RecT	NA
UHGV-0088668_66	eggNOG-mapper	272626.lin2413	Recombinational DNA repair protein (RecE pathway)	NA
UHGV-0088668_66	Pfam	PF03837	RecT family	RecT
UHGV-0088668_66	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0088668_66	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0088668_66	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0088668_67	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0088668_67	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0088668_67	UniRef90	UniRef90_A0A2V2FMD6	Single-stranded DNA-binding protein	NA
UHGV-0088668_67	eggNOG-mapper	931626.Awo_c35500	Single-stranded DNA-binding protein	NA
UHGV-0088668_67	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0088668_67	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0088668_67	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0088668_67	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0088668_67	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0088668_68	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0088668_68	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0088668_68	UniRef90	UniRef90_A0A410PX27	IstB_IS21 domain-containing protein	NA
UHGV-0088668_68	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0088668_68	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0088668_68	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0088668_68	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0088668_70	PHROG	phrog_824	NA	unknown function
UHGV-0088668_70	UniRef90	UniRef90_A0A6N8GXS9	VRR-NUC domain-containing protein	NA
UHGV-0088668_70	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0088668_70	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0088668_70	Structural annotation	PF08774	NA	NA