UHGV-0088790

Genome information

Genome length 58,048 bps

CDS count 108

Completeness 100.00% (complete)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088790
vOTU ID	vOTU-003745
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_193613
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.24
Jumbo phage	No

Genome content
Genome length	58,048 bps
GC content	47.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	108
CDS density	85.34%
Average CDS length	460.89 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088790_1	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0088790_1	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0088790_1	UniRef90	UniRef90_A0A3B8HVU5	RNA-splicing ligase RtcB (Fragment)	NA
UHGV-0088790_1	eggNOG-mapper	1294142.CINTURNW_1879	tRNA-splicing ligase RtcB	NA
UHGV-0088790_1	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0088790_1	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0088790_3	Structural annotation	NF009949	NA	NA
UHGV-0088790_4	Structural annotation	NF009949	NA	NA
UHGV-0088790_5	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0088790_5	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0088790_5	UniRef90	UniRef90_UPI001A9B5A42	recombinase family protein	NA
UHGV-0088790_5	eggNOG-mapper	1443122.Z958_05795	Resolvase, N terminal domain	NA
UHGV-0088790_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0088790_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0088790_5	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0088790_6	UniRef90	UniRef90_A0A417DZ16	HTH cro/C1-type domain-containing protein	NA
UHGV-0088790_6	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0088790_8	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0088790_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0088790_9	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0088790_9	UniRef90	UniRef90_A0A8D4D1X2	Bro-N domain-containing protein	NA
UHGV-0088790_9	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0088790_9	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0088790_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0088790_9	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0088790_10	UniRef90	UniRef90_UPI001C0FD6CA	FxLYD domain-containing protein	NA
UHGV-0088790_10	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0088790_10	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-0088790_15	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088790_15	eggNOG-mapper	1408437.JNJN01000010_gene1241	NA	NA
UHGV-0088790_17	PHROG	phrog_7882	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0088790_17	UniRef90	UniRef90_A0A373HJP6	RepA_N domain-containing protein	NA
UHGV-0088790_17	eggNOG-mapper	1189612.A33Q_3266	NA	NA
UHGV-0088790_17	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-0088790_17	Structural annotation	PF06970, MF_01177, NF040642, COG5625	NA	NA
UHGV-0088790_19	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0088790_19	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0088790_19	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0088790_19	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0088790_19	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0088790_19	COG	COG0305	Replicative DNA helicase	NA
UHGV-0088790_19	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0088790_20	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0088790_20	Pfam	PF19808	NA	DUF6291
UHGV-0088790_20	Structural annotation	PF19808	NA	NA
UHGV-0088790_21	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0088790_21	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0088790_21	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0088790_21	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0088790_21	Structural annotation	NF007260	NA	NA
UHGV-0088790_26	Structural annotation	NF041588	NA	NA
UHGV-0088790_32	PHROG	phrog_3136	NA	unknown function
UHGV-0088790_32	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0088790_32	eggNOG-mapper	394503.Ccel_3165	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0088790_32	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0088790_32	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0088790_33	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0088790_33	eggNOG-mapper	1287488.HMPREF0671_07525	Eco57I restriction-modification methylase	NA
UHGV-0088790_33	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0088790_33	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0088790_34	Structural annotation	PF16677	NA	NA
UHGV-0088790_35	PHROG	phrog_7704	NA	unknown function
UHGV-0088790_35	UniRef90	UniRef90_UPI001495255A	NA	NA
UHGV-0088790_35	Pfam	PF04448	NA	DUF551
UHGV-0088790_37	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-0088790_40	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0088790_42	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0088790_42	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0088790_42	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0088790_42	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0088790_44	PHROG	phrog_4572	NA	unknown function
UHGV-0088790_44	eggNOG-mapper	397288.C806_00091	NA	NA
UHGV-0088790_45	PHROG	phrog_18107	NA	unknown function
UHGV-0088790_45	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0088790_45	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0088790_45	Structural annotation	PF05037	NA	NA
UHGV-0088790_46	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0088790_46	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0088790_46	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0088790_46	Pfam	PF13479	AAA domain	AAA_24
UHGV-0088790_46	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0088790_48	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0088790_48	eggNOG-mapper	1165096.ARWF01000001_gene689	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0088790_48	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0088790_48	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0088790_48	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0088790_49	Structural annotation	PF14143	NA	NA
UHGV-0088790_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0088790_50	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0088790_52	Structural annotation	TIGR03826	NA	NA
UHGV-0088790_54	Structural annotation	PF10922	NA	NA
UHGV-0088790_55	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0088790_55	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0088790_55	UniRef90	UniRef90_A0A0B5A507	Bro-N domain-containing protein	NA
UHGV-0088790_55	eggNOG-mapper	1589749.A0A0B5A507_9CAUD	DNA binding	NA
UHGV-0088790_55	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0088790_55	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0088790_55	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0088790_56	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0088790_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088790_56	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0088790_57	UniRef90	UniRef90_A0A316RBI4	HTH cro/C1-type domain-containing protein	NA
UHGV-0088790_57	eggNOG-mapper	663278.Ethha_0519	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0088790_57	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0088790_57	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0088790_62	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0088790_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088790_62	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0088790_63	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0088790_63	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0088790_63	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0088790_63	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0088790_63	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0088790_63	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0088790_63	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0088790_66	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0088790_66	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0088790_66	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0088790_66	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0088790_66	Pfam	PF13614	AAA domain	AAA_31
UHGV-0088790_66	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0088790_66	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0088790_68	Structural annotation	PF07878	NA	NA
UHGV-0088790_72	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0088790_73	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0088790_74	PHROG	phrog_16490	NA	unknown function
UHGV-0088790_74	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0088790_77	UniRef90	UniRef90_A0A1Y3R5J8	RHH_1 domain-containing protein	NA
UHGV-0088790_77	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0088790_77	Pfam	PF09274	ParG	ParG
UHGV-0088790_77	Structural annotation	PF10723	NA	NA
UHGV-0088790_79	PHROG	phrog_5765	NA	unknown function
UHGV-0088790_79	UniRef90	UniRef90_UPI001D0EF465	BC1881 family protein	NA
UHGV-0088790_79	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-0088790_79	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0088790_82	Structural annotation	PF07870, MF_01506	NA	NA
UHGV-0088790_83	PHROG	phrog_15303	NA	unknown function
UHGV-0088790_83	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0088790_85	KOfam	K07273	acm; lysozyme	NA
UHGV-0088790_85	PHROG	phrog_291	endolysin	lysis
UHGV-0088790_85	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0088790_85	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0088790_85	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0088790_85	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0088790_85	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0088790_86	PHROG	phrog_1382	NA	unknown function
UHGV-0088790_86	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-0088790_88	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0088790_88	COG	COG5492	NA	NA
UHGV-0088790_89	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-0088790_90	PHROG	phrog_18725	NA	unknown function
UHGV-0088790_90	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0088790_91	PHROG	phrog_13879	NA	unknown function
UHGV-0088790_91	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0088790_91	Pfam	PF19789	NA	DUF6273
UHGV-0088790_91	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0088790_92	PHROG	phrog_1194	NA	unknown function
UHGV-0088790_92	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0088790_92	Pfam	PF20458	NA	DUF6711
UHGV-0088790_92	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0088790_93	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0088790_93	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-0088790_93	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0088790_93	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0088790_94	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0088790_95	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0088790_95	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0088790_95	Pfam	PF16478	NA	DUF5055
UHGV-0088790_95	Structural annotation	PF16478	NA	NA
UHGV-0088790_96	PHROG	phrog_158	major tail protein	tail
UHGV-0088790_96	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0088790_96	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0088790_96	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0088790_97	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0088790_99	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0088790_99	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0088790_100	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0088790_100	Structural annotation	TIGR01560	NA	NA
UHGV-0088790_101	PHROG	phrog_29	major head protein	head and packaging
UHGV-0088790_101	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0088790_101	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0088790_101	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0088790_101	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0088790_104	UniRef90	UniRef90_A0A3E2TS79	NA	NA
UHGV-0088790_104	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0088790_104	Structural annotation	PF14359, NF040588, COG3613	NA	NA
UHGV-0088790_105	PHROG	phrog_64	portal protein	head and packaging
UHGV-0088790_105	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0088790_105	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0088790_105	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0088790_105	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0088790_107	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0088790_107	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0088790_107	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0088790_107	COG	COG5410	NA	NA
UHGV-0088790_107	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0088790_108	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0088790_108	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0088790_108	UniRef90	UniRef90_UPI001BEE7672	RtcB family protein	NA
UHGV-0088790_108	eggNOG-mapper	1230342.CTM_07021	tRNA-splicing ligase RtcB	NA
UHGV-0088790_108	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0088790_108	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0088790_108	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA