UHGV-0088811

Genome information

Genome length 35,160 bps

CDS count 58

Completeness 99.34% (high-quality)

geNomad score 0.9682

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088811
vOTU ID	vOTU-068096
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_174071
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.34% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9682
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.94
Jumbo phage	No

Genome content
Genome length	35,160 bps
GC content	37.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	89.03%
Average CDS length	542.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088811_1	UniRef90	UniRef90_A0A1Y4H070	Chemotaxis protein	NA
UHGV-0088811_1	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0088811_1	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0088811_2	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0088811_2	UniRef90	UniRef90_A0A417C3D7	Immunity protein	NA
UHGV-0088811_2	eggNOG-mapper	1408823.AXUS01000009_gene1981	Host cell surface-exposed lipoprotein	NA
UHGV-0088811_2	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0088811_2	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0088811_2	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0088811_3	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0088811_3	UniRef90	UniRef90_A0A1V0QEI2	Transcriptional regulator	NA
UHGV-0088811_3	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0088811_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0088811_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0088811_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0088811_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0088811_6	UniRef90	UniRef90_UPI001BC85B83	helix-turn-helix domain-containing protein	NA
UHGV-0088811_6	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0088811_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088811_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0088811_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0088811_10	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0088811_12	UniRef90	UniRef90_UPI0019FC5CCD	NA	NA
UHGV-0088811_12	Structural annotation	PF11195	NA	NA
UHGV-0088811_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0088811_13	UniRef90	UniRef90_A0A414B860	XRE family transcriptional regulator	NA
UHGV-0088811_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088811_13	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0088811_13	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0088811_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0088811_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0088811_18	UniRef90	UniRef90_A0A414B859	ParA family protein	NA
UHGV-0088811_18	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0088811_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0088811_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0088811_18	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0088811_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0088811_19	PHROG	phrog_15982	NA	unknown function
UHGV-0088811_19	UniRef90	UniRef90_A0A414B854	ParB domain-containing protein	NA
UHGV-0088811_19	eggNOG-mapper	1235792.C808_00072	ParB-like nuclease domain	NA
UHGV-0088811_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0088811_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0088811_19	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0088811_22	PHROG	phrog_15768	NA	unknown function
UHGV-0088811_22	UniRef90	UniRef90_A0A1H8R574	Helix-turn-helix domain-containing protein	NA
UHGV-0088811_22	eggNOG-mapper	742740.HMPREF9474_03492	DnaD domain protein	NA
UHGV-0088811_22	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0088811_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0088811_22	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0088811_24	UniRef90	UniRef90_A0A1C5MB66	NA	NA
UHGV-0088811_24	Pfam	PF19789	NA	DUF6273
UHGV-0088811_24	Structural annotation	PF19789	NA	NA
UHGV-0088811_27	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0088811_28	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0088811_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0088811_29	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0088811_29	UniRef90	UniRef90_A0A414B864	XRE family transcriptional regulator	NA
UHGV-0088811_29	Pfam	PF13413	Helix-turn-helix domain	HTH_25
UHGV-0088811_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088811_29	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0088811_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0088811_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0088811_30	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0088811_30	Structural annotation	PF02996	NA	NA
UHGV-0088811_32	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0088811_32	PHROG	phrog_216	integrase	integration and excision
UHGV-0088811_32	UniRef90	UniRef90_A0A414B850	Site-specific integrase	NA
UHGV-0088811_32	eggNOG-mapper	1235793.C809_02656	PFAM Phage integrase family	NA
UHGV-0088811_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0088811_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0088811_32	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0088811_33	UniRef90	UniRef90_A0A414B845	XRE family transcriptional regulator	NA
UHGV-0088811_33	eggNOG-mapper	476272.RUMHYD_03617	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0088811_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088811_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0088811_33	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0088811_34	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088811_34	UniRef90	UniRef90_A0A414B846	HNH endonuclease	NA
UHGV-0088811_34	eggNOG-mapper	908340.HMPREF9406_2583	HNH nucleases	NA
UHGV-0088811_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0088811_34	Structural annotation	TIGR02646	NA	NA
UHGV-0088811_35	UniRef90	UniRef90_UPI001A918125	P27 family phage terminase small subunit	NA
UHGV-0088811_35	eggNOG-mapper	358681.BBR47_29130	Phage terminase, small subunit	NA
UHGV-0088811_35	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0088811_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0088811_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0088811_36	UniRef90	UniRef90_A0A414B844	Terminase large subunit	NA
UHGV-0088811_36	eggNOG-mapper	1235798.C817_04582	Phage Terminase	NA
UHGV-0088811_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0088811_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0088811_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0088811_36	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0088811_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-0088811_37	UniRef90	UniRef90_A0A414B8G4	Phage portal protein	NA
UHGV-0088811_37	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0088811_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0088811_37	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0088811_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0088811_37	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0088811_38	KOfam	K06904	NA	NA
UHGV-0088811_38	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0088811_38	UniRef90	UniRef90_A0A414B834	HK97 family phage prohead protease	NA
UHGV-0088811_38	eggNOG-mapper	1232446.BAIE02000002_gene825	Phage prohead protease, HK97 family	NA
UHGV-0088811_38	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0088811_38	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0088811_38	COG	COG3740	Phage head maturation protease	NA
UHGV-0088811_38	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0088811_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-0088811_39	UniRef90	UniRef90_A0A414B839	Phage major capsid protein	NA
UHGV-0088811_39	eggNOG-mapper	908340.HMPREF9406_2577	phage major capsid protein, HK97 family	NA
UHGV-0088811_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0088811_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0088811_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0088811_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0088811_40	PHROG	phrog_2550	NA	unknown function
UHGV-0088811_40	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-0088811_40	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0088811_41	PHROG	phrog_19734	NA	unknown function
UHGV-0088811_41	UniRef90	UniRef90_A0A414B852	Head-tail adaptor protein	NA
UHGV-0088811_41	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0088811_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0088811_42	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0088811_42	Structural annotation	PF05657	NA	NA
UHGV-0088811_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0088811_43	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0088811_43	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0088811_43	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0088811_43	Structural annotation	TIGR01725	NA	NA
UHGV-0088811_44	PHROG	phrog_88	major tail protein	tail
UHGV-0088811_44	UniRef90	UniRef90_A0A414B835	Phage tail protein	NA
UHGV-0088811_44	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0088811_44	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0088811_45	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0088811_45	Structural annotation	PF11836	NA	NA
UHGV-0088811_46	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0088811_46	PHROG	phrog_5218	NA	unknown function
UHGV-0088811_46	UniRef90	UniRef90_A0A414B831	PhageMin_Tail domain-containing protein	NA
UHGV-0088811_46	eggNOG-mapper	1235798.C817_04592	Phage-related minor tail protein	NA
UHGV-0088811_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0088811_46	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0088811_46	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0088811_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0088811_47	UniRef90	UniRef90_A0A414B833	Phage tail protein	NA
UHGV-0088811_47	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0088811_47	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0088811_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-0088811_47	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0088811_48	PHROG	phrog_13289	tail protein	tail
UHGV-0088811_48	UniRef90	UniRef90_A0A414B824	Prophage_tail domain-containing protein	NA
UHGV-0088811_48	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0088811_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0088811_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0088811_48	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0088811_49	PHROG	phrog_16164	NA	unknown function
UHGV-0088811_49	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-0088811_49	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0088811_50	UniRef90	UniRef90_UPI001D075611	GDSL-type esterase/lipase family protein	NA
UHGV-0088811_50	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0088811_51	PHROG	phrog_2310	NA	unknown function
UHGV-0088811_52	UniRef90	UniRef90_A0A413WS40	Ribbon-helix-helix protein, CopG family	NA
UHGV-0088811_52	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0088811_54	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0088811_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0088811_54	UniRef90	UniRef90_A0A414B829	Integrase	NA
UHGV-0088811_54	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0088811_54	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0088811_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0088811_54	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0088811_54	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0088811_57	PHROG	phrog_199	holin	lysis
UHGV-0088811_57	UniRef90	UniRef90_A0A414B826	Holin	NA
UHGV-0088811_57	eggNOG-mapper	394503.Ccel_2943	toxin secretion phage lysis holin	NA
UHGV-0088811_57	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0088811_57	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0088811_57	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0088811_57	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0088811_58	KOfam	K07273	acm; lysozyme	NA
UHGV-0088811_58	PHROG	phrog_291	endolysin	lysis
UHGV-0088811_58	UniRef90	UniRef90_A0A174K8T9	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0088811_58	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0088811_58	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0088811_58	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0088811_58	Structural annotation	PF01183, PF01471, MF_02227, NF007360, COG3757, COG3409	NA	NA