UHGV-0088830

Genome information

Genome length 53,100 bps

CDS count 95

Completeness 92.86% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088830
vOTU ID	vOTU-077998
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_180234
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.77
Jumbo phage	No

Genome content
Genome length	53,100 bps
GC content	40.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	95
CDS density	88.05%
Average CDS length	496.96 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088830_1	eggNOG-mapper	1408321.JNJD01000006_gene953	NA	NA
UHGV-0088830_2	UniRef90	UniRef90_A0A3C1J1V7	VanZ family protein	NA
UHGV-0088830_2	eggNOG-mapper	411470.RUMGNA_01815	NA	NA
UHGV-0088830_2	Pfam	PF04892	VanZ like family	VanZ
UHGV-0088830_2	COG	COG4767	Glycopeptide antibiotics resistance protein	NA
UHGV-0088830_3	KOfam	K03090	sigB; RNA polymerase sigma-B factor	NA
UHGV-0088830_3	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0088830_3	UniRef90	UniRef90_A0A3C1J1V2	RNA polymerase sigma-G factor (Fragment)	NA
UHGV-0088830_3	eggNOG-mapper	397287.C807_00459	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0088830_3	Pfam	PF04539	Sigma-70 region 3	Sigma70_r3
UHGV-0088830_3	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0088830_3	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0088830_3	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0088830_3	Structural annotation	PF04545, PF04539, MF_00962, NF006071, COG1191	NA	NA
UHGV-0088830_6	eggNOG-mapper	397290.C810_01326	NA	NA
UHGV-0088830_8	eggNOG-mapper	411902.CLOBOL_05754	NA	NA
UHGV-0088830_10	PHROG	phrog_11100	NA	unknown function
UHGV-0088830_10	eggNOG-mapper	1283077.M1ICI7_9CAUD	NA	NA
UHGV-0088830_11	PHROG	phrog_31631	NA	unknown function
UHGV-0088830_12	Pfam	PF05534	HicB family	HicB
UHGV-0088830_12	Structural annotation	PF03869, NF041793	NA	NA
UHGV-0088830_14	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0088830_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0088830_15	Structural annotation	PF16677	NA	NA
UHGV-0088830_17	Structural annotation	PF20556	NA	NA
UHGV-0088830_20	Structural annotation	PF04466	NA	NA
UHGV-0088830_21	UniRef90	UniRef90_UPI001D08650D	Com family DNA-binding transcriptional regulator	NA
UHGV-0088830_21	Pfam	PF10122	NA	Mu-like_Com
UHGV-0088830_22	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0088830_22	UniRef90	UniRef90_A0A352SH30	Terminase_6C domain-containing protein	NA
UHGV-0088830_22	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0088830_22	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0088830_22	COG	COG5410	NA	NA
UHGV-0088830_22	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0088830_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0088830_23	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0088830_23	Structural annotation	PF02996	NA	NA
UHGV-0088830_24	PHROG	phrog_419	NA	unknown function
UHGV-0088830_24	UniRef90	UniRef90_A0A0V8CZM6	Phage-associated protein	NA
UHGV-0088830_24	eggNOG-mapper	1298920.KI911353_gene2655	NA	NA
UHGV-0088830_24	Structural annotation	PF14083	NA	NA
UHGV-0088830_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0088830_25	UniRef90	UniRef90_UPI001D0761B7	phage portal protein	NA
UHGV-0088830_25	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0088830_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0088830_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0088830_26	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0088830_27	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0088830_28	PHROG	phrog_29	major head protein	head and packaging
UHGV-0088830_28	UniRef90	UniRef90_R6CEC6	Phage major capsid protein E	NA
UHGV-0088830_28	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0088830_28	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0088830_28	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0088830_29	Structural annotation	PF21169	NA	NA
UHGV-0088830_30	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0088830_31	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0088830_32	PHROG	phrog_1129	holin	lysis
UHGV-0088830_32	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0088830_32	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0088830_32	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0088830_32	Structural annotation	PF06946	NA	NA
UHGV-0088830_33	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0088830_34	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0088830_34	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0088830_34	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0088830_35	Structural annotation	PF05657	NA	NA
UHGV-0088830_36	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0088830_36	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0088830_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0088830_39	PHROG	phrog_291	endolysin	lysis
UHGV-0088830_39	UniRef90	UniRef90_UPI001D05F2B6	peptidoglycan-binding protein	NA
UHGV-0088830_39	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0088830_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0088830_39	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0088830_39	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0088830_39	Structural annotation	PF01183, PF01471, MF_02227, NF007360, COG3757, COG3409	NA	NA
UHGV-0088830_40	PHROG	phrog_28918	NA	unknown function
UHGV-0088830_40	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0088830_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0088830_41	PHROG	phrog_1194	NA	unknown function
UHGV-0088830_41	Pfam	PF20458	NA	DUF6711
UHGV-0088830_41	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0088830_42	PHROG	phrog_18190	NA	unknown function
UHGV-0088830_42	UniRef90	UniRef90_UPI001D0767E1	gp58-like family protein	NA
UHGV-0088830_42	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0088830_45	PHROG	phrog_17196	kinase	other
UHGV-0088830_45	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0088830_45	Structural annotation	PF13619	NA	NA
UHGV-0088830_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0088830_46	UniRef90	UniRef90_UPI001D074CCD	helix-turn-helix domain-containing protein	NA
UHGV-0088830_46	eggNOG-mapper	411463.EUBVEN_01507	NA	NA
UHGV-0088830_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0088830_46	Structural annotation	PF13443, PF00717, MF_00015, NF041951, TIGR02228, COG3655	NA	NA
UHGV-0088830_48	Structural annotation	PF14947, NF008122, COG4754	NA	NA
UHGV-0088830_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0088830_49	UniRef90	UniRef90_UPI001D081DA8	helix-turn-helix domain-containing protein	NA
UHGV-0088830_49	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0088830_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0088830_49	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0088830_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0088830_50	UniRef90	UniRef90_UPI001D081A91	helix-turn-helix transcriptional regulator	NA
UHGV-0088830_50	eggNOG-mapper	1219626.HMPREF1639_07265	sequence-specific DNA binding	NA
UHGV-0088830_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088830_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0088830_50	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0088830_57	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0088830_57	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0088830_57	UniRef90	UniRef90_UPI001D084E13	phage regulatory protein/antirepressor Ant	NA
UHGV-0088830_57	eggNOG-mapper	642492.Clole_1828	Phage antirepressor protein	NA
UHGV-0088830_57	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0088830_57	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0088830_57	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0088830_57	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0088830_57	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0088830_58	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0088830_58	PHROG	phrog_19890	NA	unknown function
UHGV-0088830_58	UniRef90	UniRef90_A0A352SFF8	SLT domain-containing protein	NA
UHGV-0088830_58	eggNOG-mapper	1410650.JHWL01000003_gene2854	lytic transglycosylase activity	NA
UHGV-0088830_58	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0088830_58	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0088830_58	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0088830_59	PHROG	phrog_22292	NA	unknown function
UHGV-0088830_62	UniRef90	UniRef90_UPI001D091C1C	sporulation initiation factor Spo0A C-terminal domain-containing protein	NA
UHGV-0088830_62	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0088830_62	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0088830_63	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0088830_63	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088830_63	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0088830_63	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0088830_63	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0088830_63	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0088830_65	Structural annotation	PF02237, MF_00257, NF037951, COG4013	NA	NA
UHGV-0088830_66	Structural annotation	PF18129, PF09953, PF04319, PF08962, MF_00369, NF002745, COG2139	NA	NA
UHGV-0088830_67	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0088830_67	UniRef90	UniRef90_UPI001D08E6D4	phage recombination protein Bet	NA
UHGV-0088830_67	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0088830_67	Pfam	PF03837	RecT family	RecT
UHGV-0088830_67	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0088830_67	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0088830_67	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0088830_68	PHROG	phrog_15480	methyltransferase	other
UHGV-0088830_68	UniRef90	UniRef90_A0A1C5WPJ5	Spermidine synthase	NA
UHGV-0088830_68	eggNOG-mapper	1232447.BAHW02000015_gene1049	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine	NA
UHGV-0088830_68	COG	COG4262	Predicted spermidine synthase with an N-terminal membrane domain	NA
UHGV-0088830_68	Structural annotation	PF02527, MF_02217, NF041650, COG2263	NA	NA
UHGV-0088830_69	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0088830_69	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0088830_69	UniRef90	UniRef90_A0A352SIH6	Lactamase_B domain-containing protein	NA
UHGV-0088830_69	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0088830_69	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0088830_69	dbAPIS	APIS058	NA	NA
UHGV-0088830_69	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0088830_69	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0088830_70	PHROG	phrog_19106	NA	unknown function
UHGV-0088830_70	UniRef90	UniRef90_UPI001D086F0C	GIY-YIG nuclease family protein	NA
UHGV-0088830_70	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0088830_70	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0088830_70	Structural annotation	TIGR01453	NA	NA
UHGV-0088830_75	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0088830_75	UniRef90	UniRef90_A0A352SFU9	DNA replication protein (Fragment)	NA
UHGV-0088830_75	eggNOG-mapper	1201292.DR75_342	DnaD domain protein	NA
UHGV-0088830_75	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0088830_75	Structural annotation	TIGR01714	NA	NA
UHGV-0088830_78	UniRef90	UniRef90_A0A352SFV2	NA	NA
UHGV-0088830_79	PHROG	phrog_26384	NA	unknown function
UHGV-0088830_81	PHROG	phrog_8684	NA	unknown function
UHGV-0088830_81	UniRef90	UniRef90_UPI00156EBF78	YopX family protein	NA
UHGV-0088830_81	eggNOG-mapper	476272.RUMHYD_03337	NA	NA
UHGV-0088830_81	Pfam	PF09643	YopX protein	YopX
UHGV-0088830_81	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0088830_81	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0088830_83	PHROG	phrog_10714	NA	unknown function
UHGV-0088830_83	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0088830_85	PHROG	phrog_20593	NA	unknown function
UHGV-0088830_86	PHROG	phrog_874	NA	unknown function
UHGV-0088830_86	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0088830_86	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0088830_86	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0088830_88	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0088830_88	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0088830_88	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-0088830_88	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0088830_88	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0088830_88	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0088830_88	COG	COG0863	DNA modification methylase	NA
UHGV-0088830_88	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0088830_89	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0088830_89	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0088830_89	UniRef90	UniRef90_UPI000462F5E4	site-specific DNA-methyltransferase	NA
UHGV-0088830_89	eggNOG-mapper	888049.HMPREF8578_0283	DNA methylase	NA
UHGV-0088830_89	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0088830_89	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0088830_89	COG	COG0863	DNA modification methylase	NA
UHGV-0088830_89	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0088830_90	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0088830_90	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0088830_90	UniRef90	UniRef90_UPI001C035897	DNA cytosine methyltransferase	NA
UHGV-0088830_90	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0088830_90	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0088830_90	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0088830_90	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0088830_90	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0088830_91	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0088830_91	PHROG	phrog_3502	NA	unknown function
UHGV-0088830_91	UniRef90	UniRef90_A0A0F0C7S4	LexA repressor	NA
UHGV-0088830_91	eggNOG-mapper	1232430.CAVG010000083_gene769	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0088830_91	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0088830_91	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0088830_93	KOfam	K07392	PRS2; AAA family ATPase	NA
UHGV-0088830_93	PHROG	phrog_3757	NA	unknown function
UHGV-0088830_93	UniRef90	UniRef90_A0A1Q6KIJ0	AAA domain-containing protein	NA
UHGV-0088830_93	eggNOG-mapper	1235802.C823_01035	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0088830_93	PADLOC	IetA_00002	NA	ietAS
UHGV-0088830_93	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0088830_93	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0088830_93	Structural annotation	PF00004, MF_00553, TIGR01242, COG1222	NA	NA
UHGV-0088830_94	UniRef90	UniRef90_A0A3D5M0V6	RHH_1 domain-containing protein	NA
UHGV-0088830_94	Structural annotation	PF01402, NF041793, COG4710	NA	NA