UHGV-0088839

Genome information

Genome length 17,114 bps

CDS count 35

Completeness 50.03% (medium-quality)

geNomad score 0.9611

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088839
vOTU ID	vOTU-027797
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_175976
BioSample	SAMEA3449216
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9611
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.6
Jumbo phage	No

Genome content
Genome length	17,114 bps
GC content	49.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	85.22%
Average CDS length	426.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088839_1	PHROG	phrog_1493	endolysin	lysis
UHGV-0088839_1	UniRef90	UniRef90_A0A2V2DH14	NlpC/P60 domain-containing protein	NA
UHGV-0088839_1	eggNOG-mapper	1414720.CBYM010000071_gene3373	Putative peptidoglycan binding domain	NA
UHGV-0088839_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0088839_1	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0088839_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0088839_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0088839_2	PHROG	phrog_962	holin	lysis
UHGV-0088839_2	UniRef90	UniRef90_UPI0008355852	phage holin	NA
UHGV-0088839_2	eggNOG-mapper	1042156.CXIVA_01570	Bacteriophage holin	NA
UHGV-0088839_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0088839_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0088839_2	COG	COG5546	NA	NA
UHGV-0088839_2	Structural annotation	COG5546	NA	NA
UHGV-0088839_3	PHROG	phrog_1863	NA	unknown function
UHGV-0088839_3	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-0088839_4	PHROG	phrog_5881	NA	unknown function
UHGV-0088839_4	Structural annotation	PF14524, TIGR04204	NA	NA
UHGV-0088839_5	PHROG	phrog_1281	NA	unknown function
UHGV-0088839_5	UniRef90	UniRef90_A0A414EBQ5	NA	NA
UHGV-0088839_5	eggNOG-mapper	608534.GCWU000341_01623	NA	NA
UHGV-0088839_5	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0088839_5	COG	COG3600	NA	NA
UHGV-0088839_5	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0088839_6	eggNOG-mapper	608534.GCWU000341_01624	NA	NA
UHGV-0088839_7	KOfam	K14059	int; integrase	NA
UHGV-0088839_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0088839_7	UniRef90	UniRef90_A0A3D1SDH9	Tyr recombinase domain-containing protein	NA
UHGV-0088839_7	eggNOG-mapper	1408823.AXUS01000024_gene2685	Arm DNA-binding domain	NA
UHGV-0088839_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0088839_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0088839_8	KOfam	K14059	int; integrase	NA
UHGV-0088839_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0088839_8	UniRef90	UniRef90_A0A136Q835	Site-specific recombinase, phage integrase family	NA
UHGV-0088839_8	eggNOG-mapper	1121382.JQKG01000052_gene2187	DNA integration	NA
UHGV-0088839_8	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0088839_8	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0088839_8	Structural annotation	PF14659, PF12286, MF_01808, NF007246, COG4973	NA	NA
UHGV-0088839_9	Pfam	PF13629	Pilus formation protein N terminal region	T2SS-T3SS_pil_N
UHGV-0088839_10	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0088839_10	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0088839_10	UniRef90	UniRef90_A0A3E2Y0I2	Helix-turn-helix domain-containing protein	NA
UHGV-0088839_10	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-0088839_10	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0088839_10	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0088839_10	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0088839_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0088839_11	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0088839_11	UniRef90	UniRef90_A0A416HP92	XRE family transcriptional regulator	NA
UHGV-0088839_11	eggNOG-mapper	1196322.A370_02807	Transcriptional regulator	NA
UHGV-0088839_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088839_11	COG	COG0662	Mannose-6-phosphate isomerase, cupin superfamily	NA
UHGV-0088839_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0088839_12	eggNOG-mapper	479437.Elen_0688	competence protein COMEC	NA
UHGV-0088839_12	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0088839_13	Structural annotation	PF11372	NA	NA
UHGV-0088839_14	PHROG	phrog_20532	NA	unknown function
UHGV-0088839_14	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0088839_14	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0088839_16	PHROG	phrog_1123	NA	unknown function
UHGV-0088839_16	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0088839_18	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0088839_18	UniRef90	UniRef90_UPI001030DCF8	siphovirus Gp157 family protein	NA
UHGV-0088839_18	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0088839_18	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0088839_18	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0088839_19	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088839_19	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0088839_19	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0088839_19	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0088839_20	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088839_20	UniRef90	UniRef90_UPI001967FBF8	HNH endonuclease	NA
UHGV-0088839_20	eggNOG-mapper	358681.BBR47_35660	HNH endonuclease	NA
UHGV-0088839_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0088839_21	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0088839_21	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0088839_21	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0088839_21	Structural annotation	PF05772	NA	NA
UHGV-0088839_22	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0088839_22	UniRef90	UniRef90_UPI001C124D77	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0088839_22	eggNOG-mapper	397288.C806_03002	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0088839_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0088839_22	Structural annotation	PF09524, PF01475, TIGR02220, NF041413, COG0735	NA	NA
UHGV-0088839_23	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0088839_23	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0088839_23	UniRef90	UniRef90_A0A855A2J4	IstB_IS21 domain-containing protein	NA
UHGV-0088839_23	eggNOG-mapper	428125.CLOLEP_01820	NA	NA
UHGV-0088839_23	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0088839_23	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0088839_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0088839_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0088839_25	UniRef90	UniRef90_A0A316LFY0	Single-stranded DNA-binding protein	NA
UHGV-0088839_25	eggNOG-mapper	1296659.S5MNH0_9CAUD	Single-strand binding protein family	NA
UHGV-0088839_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0088839_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0088839_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0088839_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0088839_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0088839_28	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0088839_28	eggNOG-mapper	469604.HMPREF0946_01097	NA	NA
UHGV-0088839_28	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0088839_30	PHROG	phrog_38832	NA	unknown function
UHGV-0088839_30	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0088839_30	Structural annotation	PF11717	NA	NA
UHGV-0088839_31	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0088839_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0088839_33	UniRef90	UniRef90_UPI00189CA0E1	RNA polymerase subunit sigma-24	NA
UHGV-0088839_33	eggNOG-mapper	1540257.JQMW01000004_gene433	NA	NA
UHGV-0088839_33	Structural annotation	PF07374	NA	NA
UHGV-0088839_34	PHROG	phrog_6568	NA	unknown function
UHGV-0088839_35	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088839_35	UniRef90	UniRef90_A0A0D8IV26	HNH endonuclease	NA
UHGV-0088839_35	eggNOG-mapper	365048.Q0H266_9CAUD	endonuclease activity	NA