UHGV-0088913

Genome information

Genome length 43,118 bps

CDS count 59

Completeness 100.00% (complete)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0088913
vOTU ID	vOTU-045284
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_195175
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.26
Jumbo phage	No

Genome content
Genome length	43,118 bps
GC content	56.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.30%
Average CDS length	688.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0088913_1	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0088913_1	UniRef90	UniRef90_A0A3D0X9I8	DNA replication protein DnaD (Fragment)	NA
UHGV-0088913_1	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0088913_1	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0088913_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0088913_2	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0088913_2	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0088913_2	UniRef90	UniRef90_G4KXN0	Single-stranded DNA-binding protein	NA
UHGV-0088913_2	eggNOG-mapper	1007096.BAGW01000007_gene1922	Single-strand binding protein family	NA
UHGV-0088913_2	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0088913_2	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0088913_2	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0088913_2	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0088913_2	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0088913_3	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0088913_3	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0088913_3	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0088913_3	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0088913_3	Pfam	PF03837	RecT family	RecT
UHGV-0088913_3	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0088913_3	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0088913_3	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0088913_4	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0088913_4	UniRef90	UniRef90_U2SK35	YqaJ viral recombinase family protein	NA
UHGV-0088913_4	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0088913_4	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0088913_4	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0088913_4	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0088913_4	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0088913_7	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0088913_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0088913_8	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0088913_8	UniRef90	UniRef90_UPI000466CBED	phage antirepressor KilAC domain-containing protein	NA
UHGV-0088913_8	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0088913_8	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0088913_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0088913_8	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0088913_8	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0088913_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0088913_9	UniRef90	UniRef90_A0A174FRM3	Helix-turn-helix domain	NA
UHGV-0088913_9	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0088913_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0088913_12	UniRef90	UniRef90_A0A354UMM3	HTH cro/C1-type domain-containing protein	NA
UHGV-0088913_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088913_12	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0088913_12	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0088913_13	KOfam	K14059	int; integrase	NA
UHGV-0088913_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0088913_13	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0088913_13	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0088913_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0088913_13	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0088913_13	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0088913_16	UniRef90	UniRef90_A0A345BNU6	Spore surface glycoprotein	NA
UHGV-0088913_16	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0088913_17	PHROG	phrog_16490	NA	unknown function
UHGV-0088913_17	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0088913_18	PHROG	phrog_22984	NA	unknown function
UHGV-0088913_20	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0088913_20	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0088913_20	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0088913_21	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0088913_21	PHROG	phrog_6523	endolysin	lysis
UHGV-0088913_21	UniRef90	UniRef90_R5RXG6	Serine-type D-Ala-D-Ala carboxypeptidase	NA
UHGV-0088913_21	eggNOG-mapper	1519439.JPJG01000023_gene536	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0088913_21	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0088913_21	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0088913_21	Structural annotation	PF02557, MF_01924, NF000380, COG1876	NA	NA
UHGV-0088913_22	PHROG	phrog_13256	NA	unknown function
UHGV-0088913_22	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0088913_24	PHROG	phrog_937	hemolysin	other
UHGV-0088913_24	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0088913_25	PHROG	phrog_22978	NA	unknown function
UHGV-0088913_25	UniRef90	UniRef90_A0A3D4D8G0	PBECR5 domain-containing protein	NA
UHGV-0088913_25	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0088913_25	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0088913_26	eggNOG-mapper	1519439.JPJG01000060_gene1904	NA	NA
UHGV-0088913_27	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0088913_27	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-0088913_27	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0088913_29	Structural annotation	PF18707, NF041740, COG5501	NA	NA
UHGV-0088913_30	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-0088913_30	Structural annotation	PF07902, NF041249	NA	NA
UHGV-0088913_31	PHROG	phrog_12105	NA	unknown function
UHGV-0088913_31	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0088913_32	PHROG	phrog_27545	NA	unknown function
UHGV-0088913_32	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0088913_32	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0088913_32	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0088913_32	Structural annotation	PF16170	NA	NA
UHGV-0088913_33	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0088913_33	UniRef90	UniRef90_A0A3D4D8F0	NA	NA
UHGV-0088913_33	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0088913_33	Pfam	PF19789	NA	DUF6273
UHGV-0088913_33	Structural annotation	PF19789	NA	NA
UHGV-0088913_34	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0088913_34	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0088913_34	UniRef90	UniRef90_UPI00068BE71D	collagen-like protein	NA
UHGV-0088913_34	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0088913_34	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0088913_34	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0088913_34	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0088913_35	PHROG	phrog_15239	NA	unknown function
UHGV-0088913_35	eggNOG-mapper	1449126.JQKL01000003_gene1694	NA	NA
UHGV-0088913_36	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0088913_36	UniRef90	UniRef90_A0A8D9UH64	Major capsid protein	NA
UHGV-0088913_36	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-0088913_36	Pfam	PF13252	NA	DUF4043
UHGV-0088913_36	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0088913_36	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0088913_37	PHROG	phrog_13908	NA	unknown function
UHGV-0088913_37	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0088913_38	Structural annotation	NF011128, COG2868	NA	NA
UHGV-0088913_39	PHROG	phrog_156	portal protein	head and packaging
UHGV-0088913_39	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0088913_39	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0088913_39	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0088913_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0088913_40	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0088913_40	UniRef90	UniRef90_A0A1Y4WJ48	Terminase-like family protein	NA
UHGV-0088913_40	eggNOG-mapper	748224.HMPREF9436_01395	Terminase-like family	NA
UHGV-0088913_40	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0088913_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0088913_40	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0088913_41	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0088913_41	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0088913_41	eggNOG-mapper	1105031.HMPREF1141_0597	DNA-packaging protein gp3	NA
UHGV-0088913_41	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0088913_41	Structural annotation	PF16677	NA	NA
UHGV-0088913_47	PHROG	phrog_3136	NA	unknown function
UHGV-0088913_47	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0088913_47	eggNOG-mapper	1007096.BAGW01000031_gene120	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0088913_47	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0088913_47	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0088913_48	PHROG	phrog_38832	NA	unknown function
UHGV-0088913_48	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0088913_48	Structural annotation	PF18300, MF_01549, TIGR02450	NA	NA
UHGV-0088913_50	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0088913_50	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0088913_51	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0088913_51	UniRef90	UniRef90_UPI000F065B6D	adenine methyltransferase	NA
UHGV-0088913_51	eggNOG-mapper	1450694.BTS2_0497	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0088913_51	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0088913_51	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0088913_51	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0088913_52	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0088913_52	UniRef90	UniRef90_UPI0006A41431	DNA cytosine methyltransferase	NA
UHGV-0088913_52	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0088913_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0088913_52	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0088913_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088913_53	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0088913_53	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0088913_54	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0088913_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0088913_54	UniRef90	UniRef90_UPI00115BCC30	helix-turn-helix domain-containing protein	NA
UHGV-0088913_54	eggNOG-mapper	272560.BPSL0549A	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0088913_54	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0088913_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0088913_54	Structural annotation	PF01381, PF13744, NF041951, COG3655, COG2944	NA	NA
UHGV-0088913_55	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0088913_55	UniRef90	UniRef90_UPI001583F66B	NA	NA
UHGV-0088913_55	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0088913_55	Pfam	PF06356	NA	DUF1064
UHGV-0088913_55	Structural annotation	PF06356	NA	NA
UHGV-0088913_58	PHROG	phrog_9804	NA	unknown function
UHGV-0088913_58	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-0088913_58	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0088913_58	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0088913_58	Structural annotation	PF11417	NA	NA
UHGV-0088913_59	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0088913_59	UniRef90	UniRef90_A0A1Y4EXZ8	NA	NA
UHGV-0088913_59	eggNOG-mapper	445972.ANACOL_01828	NA	NA