UHGV-0089137

Genome information

Genome length 34,975 bps

CDS count 57

Completeness 91.64% (high-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0089137
vOTU ID	vOTU-069341
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_169500
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.64% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.56
Jumbo phage	No

Genome content
Genome length	34,975 bps
GC content	47.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	94.65%
Average CDS length	585.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0089137_1	COG	COG5492	NA	NA
UHGV-0089137_1	Structural annotation	PF18341, NF040678, COG4991	NA	NA
UHGV-0089137_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0089137_2	PHROG	phrog_435	endolysin	lysis
UHGV-0089137_2	UniRef90	UniRef90_A0A6N7X525	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0089137_2	eggNOG-mapper	1392487.JIAD01000001_gene506	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0089137_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0089137_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0089137_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0089137_3	PHROG	phrog_1129	holin	lysis
UHGV-0089137_3	UniRef90	UniRef90_A0A2S0L5I2	Holin	NA
UHGV-0089137_3	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0089137_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0089137_3	Structural annotation	PF06946	NA	NA
UHGV-0089137_4	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0089137_6	Structural annotation	PF03422	NA	NA
UHGV-0089137_7	PHROG	phrog_9478	minor tail protein	tail
UHGV-0089137_7	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-0089137_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0089137_7	Structural annotation	PF14594, PF08931, PF20942, TIGR01665, COG4926	NA	NA
UHGV-0089137_8	PHROG	phrog_5163	minor tail protein	tail
UHGV-0089137_8	UniRef90	UniRef90_A0A1C5RIA0	Phage-related protein	NA
UHGV-0089137_8	eggNOG-mapper	1158610.UC3_03184	Phage tail protein	NA
UHGV-0089137_8	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0089137_8	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0089137_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0089137_8	Structural annotation	PF05709, PF11614, TIGR01633, COG4722	NA	NA
UHGV-0089137_9	PHROG	phrog_1204	tail protein	tail
UHGV-0089137_9	UniRef90	UniRef90_A0A7Y8VRG3	Tape measure protein	NA
UHGV-0089137_9	eggNOG-mapper	1158602.I590_00638	nuclear chromosome segregation	NA
UHGV-0089137_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0089137_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0089137_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0089137_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0089137_10	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0089137_10	UniRef90	UniRef90_F0YWR6	NA	NA
UHGV-0089137_10	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-0089137_11	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0089137_11	UniRef90	UniRef90_UPI001EDE7A75	tail assembly chaperone	NA
UHGV-0089137_11	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0089137_11	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0089137_11	Structural annotation	PF12363	NA	NA
UHGV-0089137_12	PHROG	phrog_238	major tail protein	tail
UHGV-0089137_12	UniRef90	UniRef90_A0A174PKY3	Phage major tail protein, TP901-1 family	NA
UHGV-0089137_12	eggNOG-mapper	476272.RUMHYD_02860	Phage tail tube protein	NA
UHGV-0089137_12	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0089137_12	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0089137_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0089137_13	PHROG	phrog_176	tail terminator	connector
UHGV-0089137_13	UniRef90	UniRef90_A0A3E3JYL5	NA	NA
UHGV-0089137_13	eggNOG-mapper	1235798.C817_03472	NA	NA
UHGV-0089137_13	Structural annotation	PF11367	NA	NA
UHGV-0089137_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0089137_14	UniRef90	UniRef90_UPI00197CA78F	HK97 gp10 family phage protein	NA
UHGV-0089137_14	eggNOG-mapper	1232453.BAIF02000011_gene3362	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0089137_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0089137_14	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0089137_15	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0089137_15	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0089137_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0089137_16	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0089137_16	UniRef90	UniRef90_UPI00051BB732	phage head-tail connector protein	NA
UHGV-0089137_16	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0089137_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0089137_16	Structural annotation	PF05135	NA	NA
UHGV-0089137_17	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0089137_17	eggNOG-mapper	1145276.T479_19965	NA	NA
UHGV-0089137_18	PHROG	phrog_840	major head protein	head and packaging
UHGV-0089137_18	UniRef90	UniRef90_A0A352CVQ3	Phage capsid protein	NA
UHGV-0089137_18	eggNOG-mapper	294382.Q5YA70_9CAUD	NA	NA
UHGV-0089137_18	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0089137_19	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0089137_19	UniRef90	UniRef90_UPI0019607A58	NA	NA
UHGV-0089137_19	eggNOG-mapper	553184.ATORI0001_1003	NA	NA
UHGV-0089137_19	Pfam	PF14265	NA	DUF4355
UHGV-0089137_19	Structural annotation	PF14265	NA	NA
UHGV-0089137_20	PHROG	phrog_3675	NA	unknown function
UHGV-0089137_20	UniRef90	UniRef90_A0A173ZDX5	YjcQ protein	NA
UHGV-0089137_20	eggNOG-mapper	1235796.C815_00922	YjcQ protein	NA
UHGV-0089137_20	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0089137_20	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0089137_22	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0089137_22	UniRef90	UniRef90_A0A7Y9B0I1	Minor capsid protein	NA
UHGV-0089137_22	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0089137_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0089137_22	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0089137_22	COG	COG2369	NA	NA
UHGV-0089137_22	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0089137_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0089137_23	UniRef90	UniRef90_A0A352CU27	Phage portal protein	NA
UHGV-0089137_23	eggNOG-mapper	1235796.C815_00925	Phage portal protein, SPP1 family	NA
UHGV-0089137_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0089137_23	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0089137_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0089137_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0089137_24	PHROG	phrog_10250	NA	unknown function
UHGV-0089137_24	UniRef90	UniRef90_UPI00088B4057	PBSX family phage terminase large subunit	NA
UHGV-0089137_24	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0089137_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0089137_24	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0089137_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0089137_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0089137_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0089137_25	Structural annotation	PF07141, NF012144	NA	NA
UHGV-0089137_27	PHROG	phrog_8680	NA	unknown function
UHGV-0089137_27	UniRef90	UniRef90_UPI0009436A6B	NA	NA
UHGV-0089137_27	eggNOG-mapper	1277892.M1IRA8_9CAUD	NA	NA
UHGV-0089137_27	Pfam	PF14386	NA	DUF4417
UHGV-0089137_28	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0089137_28	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0089137_28	UniRef90	UniRef90_UPI0012DE0D94	site-specific DNA-methyltransferase	NA
UHGV-0089137_28	eggNOG-mapper	139871.A9D9Q9_9VIRU	N-methyltransferase activity	NA
UHGV-0089137_28	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0089137_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0089137_28	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0089137_29	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0089137_29	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0089137_29	UniRef90	UniRef90_A0A2N5KYN6	Chromosome partitioning protein ParB	NA
UHGV-0089137_29	eggNOG-mapper	1423724.BAMM01000023_gene1920	DNA methylase	NA
UHGV-0089137_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0089137_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0089137_29	COG	COG0863	DNA modification methylase	NA
UHGV-0089137_31	PHROG	phrog_3782	NA	unknown function
UHGV-0089137_31	UniRef90	UniRef90_R6CA91	NA	NA
UHGV-0089137_31	eggNOG-mapper	1408437.JNJN01000033_gene2213	NA	NA
UHGV-0089137_31	Pfam	PF14192	NA	DUF4314
UHGV-0089137_31	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0089137_31	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-0089137_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0089137_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0089137_32	Structural annotation	PF04545, PF01920, MF_00674, TIGR01637, COG2739	NA	NA
UHGV-0089137_35	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0089137_35	eggNOG-mapper	1345695.CLSA_c30110	NA	NA
UHGV-0089137_36	Structural annotation	PF10944	NA	NA
UHGV-0089137_37	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0089137_37	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0089137_37	UniRef90	UniRef90_A0A374FYV5	Phage antirepressor	NA
UHGV-0089137_37	eggNOG-mapper	411490.ANACAC_00755	BRO family, N-terminal domain	NA
UHGV-0089137_37	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0089137_37	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0089137_37	COG	COG3617	Prophage antirepressor	NA
UHGV-0089137_37	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0089137_38	PHROG	phrog_21026	NA	unknown function
UHGV-0089137_40	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0089137_40	UniRef90	UniRef90_A0A6N7XIA3	NA	NA
UHGV-0089137_40	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0089137_40	Pfam	PF06356	NA	DUF1064
UHGV-0089137_40	Structural annotation	PF06356	NA	NA
UHGV-0089137_41	UniRef90	UniRef90_UPI0012923FF4	helix-turn-helix domain-containing protein	NA
UHGV-0089137_41	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0089137_42	PHROG	phrog_474	phosphofructokinase	other
UHGV-0089137_42	UniRef90	UniRef90_UPI001D174B3C	NA	NA
UHGV-0089137_42	eggNOG-mapper	1111121.HMPREF1247_0033	NA	NA
UHGV-0089137_42	Pfam	PF19905	NA	DUF6378
UHGV-0089137_45	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0089137_45	UniRef90	UniRef90_I8RAX4	Phage replication initiation protein	NA
UHGV-0089137_45	eggNOG-mapper	1136177.KCA1_1070	DnaD domain protein	NA
UHGV-0089137_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0089137_45	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0089137_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0089137_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0089137_46	UniRef90	UniRef90_A0A6N7XL53	Single-stranded DNA-binding protein	NA
UHGV-0089137_46	eggNOG-mapper	936375.HMPREF1152_1764	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0089137_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0089137_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0089137_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0089137_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0089137_46	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0089137_47	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0089137_47	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0089137_47	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0089137_47	Pfam	PF05772	NinB protein	NinB
UHGV-0089137_48	PHROG	phrog_7566	NA	unknown function
UHGV-0089137_48	UniRef90	UniRef90_UPI001C1E3E38	phosphoenolpyruvate carboxykinase	NA
UHGV-0089137_48	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0089137_49	PHROG	phrog_14970	NA	unknown function
UHGV-0089137_49	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0089137_49	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0089137_49	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0089137_54	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0089137_54	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0089137_54	COG	COG1910	Periplasmic molybdate-binding protein/domain	NA
UHGV-0089137_54	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0089137_55	UniRef90	UniRef90_UPI0004E22973	helix-turn-helix domain-containing protein	NA
UHGV-0089137_55	eggNOG-mapper	718252.FP2_01130	NA	NA
UHGV-0089137_55	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0089137_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0089137_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0089137_56	UniRef90	UniRef90_UPI00135AEB63	helix-turn-helix domain-containing protein	NA
UHGV-0089137_56	eggNOG-mapper	697329.Rumal_3450	NA	NA
UHGV-0089137_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0089137_56	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0089137_56	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0089137_57	eggNOG-mapper	936375.HMPREF1152_0651	Belongs to the 'phage' integrase family	NA
UHGV-0089137_57	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0089137_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA