UHGV-0089179

Genome information

Genome length 36,418 bps

CDS count 62

Completeness 99.58% (high-quality)

geNomad score 0.9122

Prediction confidence Confident

Genome information
Genome ID	UHGV-0089179
vOTU ID	vOTU-010142
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_173255
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.58% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9122
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.84
Jumbo phage	No

Genome content
Genome length	36,418 bps
GC content	37.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	89.27%
Average CDS length	527.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0089179_8	eggNOG-mapper	908337.HMPREF9257_0550	NA	NA
UHGV-0089179_12	Pfam	PF05284	NA	DUF736
UHGV-0089179_14	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0089179_14	UniRef90	UniRef90_R6PLH2	Erf family protein	NA
UHGV-0089179_14	eggNOG-mapper	1095743.HMPREF1054_1927	ERF superfamily	NA
UHGV-0089179_14	Pfam	PF04404	ERF superfamily	ERF
UHGV-0089179_14	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0089179_21	UniRef90	UniRef90_A0A292SRC5	Phosphoribosylglycinamide formyltransferase	NA
UHGV-0089179_21	eggNOG-mapper	1121296.JONJ01000012_gene368	NA	NA
UHGV-0089179_21	Pfam	PF20075	NA	DUF6471
UHGV-0089179_21	Structural annotation	PF20075, TIGR03070, COG3655	NA	NA
UHGV-0089179_23	eggNOG-mapper	411467.BACCAP_03064	NA	NA
UHGV-0089179_25	UniRef90	UniRef90_A0A1Q6TXC8	HTH cro/C1-type domain-containing protein	NA
UHGV-0089179_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0089179_25	Structural annotation	PF13560, PF20432, MF_00535, NF041951, COG1396	NA	NA
UHGV-0089179_26	PHROG	phrog_8366	NA	unknown function
UHGV-0089179_26	eggNOG-mapper	56107.Cylst_3466	NA	NA
UHGV-0089179_27	PHROG	phrog_1281	NA	unknown function
UHGV-0089179_27	UniRef90	UniRef90_A0A292SR93	NA	NA
UHGV-0089179_27	eggNOG-mapper	1028806.GGE_0444	NA	NA
UHGV-0089179_27	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0089179_27	COG	COG3600	NA	NA
UHGV-0089179_27	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0089179_30	UniRef90	UniRef90_A0A2Z5X2Q6	Site-specific recombinase, resolvase family protein	NA
UHGV-0089179_30	eggNOG-mapper	521045.Kole_1963	NA	NA
UHGV-0089179_30	Pfam	PF18863	AbiJ N-terminal domain 4	AbiJ_NTD4
UHGV-0089179_30	Structural annotation	PF18863, PF05168, COG1895	NA	NA
UHGV-0089179_31	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0089179_31	UniRef90	UniRef90_A0A843HSC6	DNA-packaging protein	NA
UHGV-0089179_31	eggNOG-mapper	999411.HMPREF1092_03330	DNA-packaging protein gp3	NA
UHGV-0089179_31	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0089179_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0089179_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0089179_32	UniRef90	UniRef90_A0A292SRG5	PBSX family phage terminase large subunit	NA
UHGV-0089179_32	eggNOG-mapper	999411.HMPREF1092_00914	phage terminase, large subunit, PBSX family	NA
UHGV-0089179_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0089179_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0089179_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0089179_32	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0089179_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0089179_33	UniRef90	UniRef90_R6QEB6	Prophage LambdaCh01 portal protein	NA
UHGV-0089179_33	eggNOG-mapper	632518.Calow_0828	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0089179_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0089179_34	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0089179_34	UniRef90	UniRef90_A0A0C7NL75	Bacteriophage A118, Gp4, minor capsid	NA
UHGV-0089179_34	eggNOG-mapper	645512.GCWU000246_00008	Phage minor capsid protein 2	NA
UHGV-0089179_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0089179_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0089179_36	UniRef90	UniRef90_A0A292SNU5	Phage major capsid protein	NA
UHGV-0089179_36	eggNOG-mapper	1321782.HMPREF1986_02268	Phage capsid family	NA
UHGV-0089179_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0089179_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0089179_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0089179_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0089179_37	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0089179_37	UniRef90	UniRef90_K7XYM6	Putative head-tail connector protein	NA
UHGV-0089179_37	eggNOG-mapper	86416.Clopa_2547	NA	NA
UHGV-0089179_37	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0089179_37	Structural annotation	PF20557	NA	NA
UHGV-0089179_38	PHROG	phrog_222	tail protein	tail
UHGV-0089179_41	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0089179_42	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0089179_44	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-0089179_44	UniRef90	UniRef90_A0A292SNJ5	TMP_3 domain-containing protein	NA
UHGV-0089179_44	eggNOG-mapper	437329.A5A3Q5_9CAUD	peptidoglycan catabolic process	NA
UHGV-0089179_44	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0089179_44	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0089179_45	PHROG	phrog_31673	NA	unknown function
UHGV-0089179_45	UniRef90	UniRef90_A0A292SNV5	HTH merR-type domain-containing protein	NA
UHGV-0089179_45	eggNOG-mapper	1370121.AUWS01000014_gene7170	transcriptional	NA
UHGV-0089179_45	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-0089179_45	COG	COG0789	DNA-binding transcriptional regulator, MerR family	NA
UHGV-0089179_46	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-0089179_46	Pfam	PF15781	ParE-like toxin of type II bacterial toxin-antitoxin system	ParE-like_toxin
UHGV-0089179_46	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-0089179_47	PHROG	phrog_817	tail fiber protein	tail
UHGV-0089179_47	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0089179_47	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0089179_48	PHROG	phrog_17658	NA	unknown function
UHGV-0089179_48	eggNOG-mapper	1033738.CAEP01000137_gene1534	NA	NA
UHGV-0089179_51	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0089179_52	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0089179_52	eggNOG-mapper	1054213.HMPREF9946_03149	NA	NA
UHGV-0089179_54	PHROG	phrog_120	baseplate protein	tail
UHGV-0089179_54	UniRef90	UniRef90_UPI0006826887	NA	NA
UHGV-0089179_54	Structural annotation	PF10761, MF_02010, NF010727, COG3628	NA	NA
UHGV-0089179_55	PHROG	phrog_6	baseplate protein	tail
UHGV-0089179_55	UniRef90	UniRef90_A0A292SNW3	Baseplate_J domain-containing protein	NA
UHGV-0089179_55	eggNOG-mapper	1408428.JNJP01000012_gene1137	of phage Mu protein gp47	NA
UHGV-0089179_55	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0089179_55	COG	COG3299	NA	NA
UHGV-0089179_55	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0089179_56	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0089179_60	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0089179_60	PHROG	phrog_5867	endolysin	lysis
UHGV-0089179_60	UniRef90	UniRef90_R6QIF3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0089179_60	eggNOG-mapper	388399.SSE37_03470	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0089179_60	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0089179_60	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0089179_60	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA