UHGV-0089263

Genome information

Genome length 39,604 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-0089263
vOTU ID	vOTU-013349
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_182172
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.48
Jumbo phage	No

Genome content
Genome length	39,604 bps
GC content	38.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.02%
Average CDS length	640.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0089263_2	eggNOG-mapper	1384065.JAGS01000001_gene524	NA	NA
UHGV-0089263_2	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0089263_3	UniRef90	UniRef90_A0A373KYU2	Glutamyl-tRNA amidotransferase	NA
UHGV-0089263_5	KOfam	K09384	NA	NA
UHGV-0089263_5	UniRef90	UniRef90_A0A412DTL3	NA	NA
UHGV-0089263_5	eggNOG-mapper	386415.NT01CX_2411	NA	NA
UHGV-0089263_5	Pfam	PF09848	Schlafen group 3, DNA/RNA helicase domain	SLFN-g3_helicase
UHGV-0089263_5	COG	COG3410	NA	NA
UHGV-0089263_7	UniRef90	UniRef90_UPI001B3C704F	helix-turn-helix domain-containing protein	NA
UHGV-0089263_7	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0089263_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0089263_8	PHROG	phrog_1794	amidase	lysis
UHGV-0089263_8	UniRef90	UniRef90_A0A373KFY8	SH3b domain-containing protein	NA
UHGV-0089263_8	eggNOG-mapper	552398.HMPREF0866_01581	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0089263_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0089263_8	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0089263_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0089263_8	Structural annotation	PF01520, PF18342, NF038140, COG0860, COG4991	NA	NA
UHGV-0089263_9	PHROG	phrog_443	holin	lysis
UHGV-0089263_9	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0089263_9	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0089263_9	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0089263_9	Structural annotation	PF16945	NA	NA
UHGV-0089263_10	PHROG	phrog_1863	NA	unknown function
UHGV-0089263_10	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0089263_10	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0089263_11	Structural annotation	PF10651, PF01095	NA	NA
UHGV-0089263_12	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0089263_12	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0089263_12	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-0089263_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0089263_12	COG	COG1511	NA	NA
UHGV-0089263_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0089263_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0089263_13	UniRef90	UniRef90_R6GVG8	Phage putative tail component N-domain protein	NA
UHGV-0089263_13	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0089263_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0089263_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0089263_14	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0089263_14	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0089263_14	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0089263_14	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0089263_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0089263_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0089263_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0089263_15	Structural annotation	PF11836	NA	NA
UHGV-0089263_16	PHROG	phrog_88	major tail protein	tail
UHGV-0089263_16	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0089263_16	eggNOG-mapper	397288.C806_00767	phage major tail protein, phi13 family	NA
UHGV-0089263_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0089263_16	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0089263_17	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0089263_17	eggNOG-mapper	1235792.C808_00089	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0089263_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0089263_17	Structural annotation	TIGR01725	NA	NA
UHGV-0089263_18	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0089263_19	PHROG	phrog_19734	NA	unknown function
UHGV-0089263_19	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0089263_19	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0089263_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0089263_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0089263_20	PHROG	phrog_749	NA	unknown function
UHGV-0089263_20	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0089263_20	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0089263_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0089263_21	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0089263_21	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0089263_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0089263_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0089263_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0089263_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0089263_22	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0089263_22	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0089263_22	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0089263_22	eggNOG-mapper	1211817.CCAT010000053_gene2131	Belongs to the peptidase S14 family	NA
UHGV-0089263_22	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0089263_22	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0089263_22	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0089263_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0089263_23	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0089263_23	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0089263_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0089263_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0089263_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0089263_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0089263_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0089263_24	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0089263_24	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0089263_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0089263_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0089263_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0089263_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0089263_25	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0089263_25	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-0089263_25	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0089263_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0089263_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0089263_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0089263_26	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0089263_26	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0089263_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0089263_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0089263_27	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-0089263_27	Structural annotation	TIGR01636	NA	NA
UHGV-0089263_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0089263_28	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0089263_28	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0089263_30	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0089263_30	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0089263_30	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0089263_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0089263_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0089263_30	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0089263_32	PHROG	phrog_824	NA	unknown function
UHGV-0089263_32	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0089263_32	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0089263_32	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0089263_32	Structural annotation	PF08774	NA	NA
UHGV-0089263_33	PHROG	phrog_24518	NA	unknown function
UHGV-0089263_33	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0089263_34	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0089263_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0089263_34	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-0089263_34	eggNOG-mapper	525254.HMPREF0072_2111	Helix-turn-helix XRE-family like proteins	NA
UHGV-0089263_34	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0089263_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0089263_34	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0089263_34	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0089263_37	PHROG	phrog_30343	NA	unknown function
UHGV-0089263_37	UniRef90	UniRef90_UPI0019620485	GNAT family N-acetyltransferase	NA
UHGV-0089263_37	eggNOG-mapper	411473.RUMCAL_00285	NA	NA
UHGV-0089263_37	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-0089263_38	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0089263_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0089263_38	UniRef90	UniRef90_UPI001B3C6404	tyrosine-type recombinase/integrase	NA
UHGV-0089263_38	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0089263_38	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0089263_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0089263_38	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0089263_38	Structural annotation	PF00589, PF13495, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-0089263_39	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0089263_39	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0089263_39	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0089263_39	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0089263_39	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0089263_39	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0089263_40	PHROG	phrog_5696	NA	unknown function
UHGV-0089263_40	UniRef90	UniRef90_UPI001B3C9C54	N-6 DNA methylase	NA
UHGV-0089263_40	eggNOG-mapper	1218076.BAYB01000042_gene5714	N-6 DNA Methylase	NA
UHGV-0089263_40	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0089263_41	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0089263_41	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0089263_41	UniRef90	UniRef90_A0A3D3D7T1	ParB domain-containing protein	NA
UHGV-0089263_41	eggNOG-mapper	445972.ANACOL_00162	ParB-like nuclease domain	NA
UHGV-0089263_41	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0089263_41	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0089263_41	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0089263_41	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0089263_44	PHROG	phrog_6058	NA	unknown function
UHGV-0089263_44	Structural annotation	NF033787	NA	NA
UHGV-0089263_45	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0089263_45	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0089263_45	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0089263_46	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0089263_46	Structural annotation	PF15597	NA	NA
UHGV-0089263_47	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0089263_47	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0089263_47	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0089263_47	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0089263_47	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0089263_47	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0089263_47	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0089263_47	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0089263_49	PHROG	phrog_585	NA	unknown function
UHGV-0089263_49	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-0089263_49	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0089263_49	Pfam	PF10711	NA	DUF2513
UHGV-0089263_49	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0089263_51	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-0089263_51	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0089263_51	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0089263_51	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0089263_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0089263_52	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0089263_52	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-0089263_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0089263_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0089263_52	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0089263_53	PHROG	phrog_1914	NA	unknown function
UHGV-0089263_53	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0089263_53	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0089263_53	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0089263_53	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0089263_53	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0089263_55	eggNOG-mapper	1232447.BAHW02000014_gene830	NA	NA
UHGV-0089263_56	KOfam	K14059	int; integrase	NA
UHGV-0089263_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0089263_56	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0089263_56	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0089263_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0089263_56	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0089263_56	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA