UHGV-0089318

Genome information

Genome length 31,857 bps

CDS count 48

Completeness 78.27% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0089318
vOTU ID	vOTU-016954
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_180185
BioSample	SAMEA3449223
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.54
Jumbo phage	No

Genome content
Genome length	31,857 bps
GC content	58.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	94.95%
Average CDS length	634.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0089318_1	PHROG	phrog_199	holin	lysis
UHGV-0089318_1	UniRef90	UniRef90_R9N6H8	Toxin secretion/phage lysis holin	NA
UHGV-0089318_1	eggNOG-mapper	1235800.C819_02219	Bacteriophage holin family	NA
UHGV-0089318_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0089318_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0089318_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0089318_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0089318_2	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0089318_2	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0089318_2	UniRef90	UniRef90_A0A6N8H6M3	M23 family metallopeptidase	NA
UHGV-0089318_2	eggNOG-mapper	1089548.KI783301_gene3172	COG0739 Membrane proteins related to metalloendopeptidases	NA
UHGV-0089318_2	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0089318_2	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0089318_4	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0089318_4	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0089318_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0089318_5	PHROG	phrog_9534	head protein	head and packaging
UHGV-0089318_5	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0089318_5	Structural annotation	PF21567	NA	NA
UHGV-0089318_6	PHROG	phrog_538	minor tail protein	tail
UHGV-0089318_6	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0089318_6	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0089318_6	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0089318_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0089318_7	PHROG	phrog_36410	NA	unknown function
UHGV-0089318_7	UniRef90	UniRef90_UPI000C7AD134	phage tail family protein	NA
UHGV-0089318_7	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0089318_7	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0089318_8	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0089318_8	UniRef90	UniRef90_A0A285PTB9	Phage tail tape measure protein	NA
UHGV-0089318_8	eggNOG-mapper	641112.ACOK01000073_gene2904	Phage tail tape measure protein, TP901 family	NA
UHGV-0089318_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0089318_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0089318_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0089318_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0089318_9	PHROG	phrog_706	NA	unknown function
UHGV-0089318_9	UniRef90	UniRef90_UPI001C0E9D0B	Gp15 family bacteriophage protein	NA
UHGV-0089318_9	eggNOG-mapper	573061.Clocel_3534	Bacteriophage Gp15 protein	NA
UHGV-0089318_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0089318_9	Structural annotation	PF06854	NA	NA
UHGV-0089318_10	PHROG	phrog_4450	NA	unknown function
UHGV-0089318_10	eggNOG-mapper	573061.Clocel_3535	NA	NA
UHGV-0089318_10	Pfam	PF20378	NA	DUF6673
UHGV-0089318_10	Structural annotation	PF10666	NA	NA
UHGV-0089318_11	PHROG	phrog_3099	NA	unknown function
UHGV-0089318_11	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-0089318_11	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0089318_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0089318_12	PHROG	phrog_3266	tail completion	connector
UHGV-0089318_12	UniRef90	UniRef90_A0A3C0IHV8	Chloramphenicol resistance protein	NA
UHGV-0089318_12	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0089318_12	Structural annotation	PF12691	NA	NA
UHGV-0089318_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0089318_13	UniRef90	UniRef90_A0A315YQZ5	Minor capsid protein	NA
UHGV-0089318_13	eggNOG-mapper	665956.HMPREF1032_02947	Minor capsid protein	NA
UHGV-0089318_13	Structural annotation	PF11114	NA	NA
UHGV-0089318_14	PHROG	phrog_3366	NA	unknown function
UHGV-0089318_14	eggNOG-mapper	1280692.AUJL01000004_gene843	NA	NA
UHGV-0089318_14	Pfam	PF20536	NA	DUF6751
UHGV-0089318_14	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0089318_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0089318_16	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-0089318_16	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0089318_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0089318_17	UniRef90	UniRef90_R5GVJ3	Bacteriophage SPP1 complete nucleotide sequence	NA
UHGV-0089318_17	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-0089318_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0089318_17	Structural annotation	PF06810	NA	NA
UHGV-0089318_18	PHROG	phrog_29156	NA	unknown function
UHGV-0089318_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0089318_19	UniRef90	UniRef90_R6NCU9	Minor capsid 2 protein	NA
UHGV-0089318_19	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0089318_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0089318_19	COG	COG2369	NA	NA
UHGV-0089318_19	Structural annotation	PF06152	NA	NA
UHGV-0089318_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0089318_20	UniRef90	UniRef90_A0A173Y8E3	Phage portal protein, putative, A118 family	NA
UHGV-0089318_20	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0089318_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0089318_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0089318_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0089318_21	UniRef90	UniRef90_A0A3D3FC70	PBSX family phage terminase large subunit	NA
UHGV-0089318_21	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-0089318_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0089318_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0089318_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0089318_21	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0089318_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0089318_23	PHROG	phrog_1233	NA	unknown function
UHGV-0089318_23	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0089318_25	PHROG	phrog_1672	NA	unknown function
UHGV-0089318_27	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0089318_27	UniRef90	UniRef90_A0A1Y4EVK6	Adenine methyltransferase	NA
UHGV-0089318_27	eggNOG-mapper	760568.Desku_0784	DNA N-6-adenine-methyltransferase	NA
UHGV-0089318_27	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0089318_27	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0089318_27	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0089318_28	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0089318_28	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0089318_28	UniRef90	UniRef90_UPI000C7A0A0E	ATP-binding protein	NA
UHGV-0089318_28	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0089318_28	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0089318_28	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0089318_29	PHROG	phrog_15768	NA	unknown function
UHGV-0089318_29	UniRef90	UniRef90_A0A2E8DHN5	Helix-turn-helix domain-containing protein	NA
UHGV-0089318_29	eggNOG-mapper	1203606.HMPREF1526_01323	Helix-turn-helix domain	NA
UHGV-0089318_29	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0089318_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0089318_29	Structural annotation	PF13730, MF_01909, NF041413, COG3355	NA	NA
UHGV-0089318_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0089318_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0089318_30	UniRef90	UniRef90_D1PJS6	Single-stranded DNA-binding protein	NA
UHGV-0089318_30	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0089318_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0089318_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0089318_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0089318_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0089318_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0089318_31	PHROG	phrog_7566	NA	unknown function
UHGV-0089318_31	UniRef90	UniRef90_UPI001C1E3E38	phosphoenolpyruvate carboxykinase	NA
UHGV-0089318_31	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0089318_32	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0089318_32	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0089318_32	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0089318_32	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0089318_33	Structural annotation	PF18300	NA	NA
UHGV-0089318_34	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0089318_34	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0089318_34	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0089318_34	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0089318_35	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0089318_35	UniRef90	UniRef90_UPI00189A2233	siphovirus Gp157 family protein	NA
UHGV-0089318_35	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0089318_35	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0089318_35	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0089318_36	UniRef90	UniRef90_H1CAR0	HTH cro/C1-type domain-containing protein	NA
UHGV-0089318_36	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0089318_37	Structural annotation	PF21596	NA	NA
UHGV-0089318_42	UniRef90	UniRef90_A0A329ULP4	Excisionase	NA
UHGV-0089318_42	eggNOG-mapper	1449050.JNLE01000005_gene3960	Helix-turn-helix domain	NA
UHGV-0089318_42	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0089318_42	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0089318_42	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0089318_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0089318_43	UniRef90	UniRef90_A0A3D1FMH4	XRE family transcriptional regulator	NA
UHGV-0089318_43	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0089318_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0089318_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0089318_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0089318_45	PHROG	phrog_38135	NA	unknown function
UHGV-0089318_45	eggNOG-mapper	1408303.JNJJ01000047_gene2868	NA	NA
UHGV-0089318_45	Pfam	PF14020	NA	DUF4236
UHGV-0089318_46	KOfam	K14059	int; integrase	NA
UHGV-0089318_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0089318_46	UniRef90	UniRef90_A0A6N8H6S7	Tyr recombinase domain-containing protein	NA
UHGV-0089318_46	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0089318_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0089318_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0089318_46	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0089318_47	eggNOG-mapper	411471.SUBVAR_05148	NA	NA