UHGV-0089426

Genome information

Genome length 25,993 bps

CDS count 41

Completeness 80.65% (medium-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0089426
vOTU ID	vOTU-035029
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_193497
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.44
Jumbo phage	No

Genome content
Genome length	25,993 bps
GC content	56.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	95.55%
Average CDS length	609.88 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0089426_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0089426_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0089426_1	UniRef90	UniRef90_UPI001314BC37	recombinase family protein	NA
UHGV-0089426_1	eggNOG-mapper	445975.COLSTE_02191	Recombinase zinc beta ribbon domain	NA
UHGV-0089426_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0089426_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0089426_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0089426_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0089426_1	Structural annotation	PF00239, NF041201, COG2452	NA	NA
UHGV-0089426_2	PHROG	phrog_17572	NA	unknown function
UHGV-0089426_2	UniRef90	UniRef90_Q9AZF7	Orf3	NA
UHGV-0089426_2	eggNOG-mapper	272623.L104552	NA	NA
UHGV-0089426_2	AcrCatalog	cluster_25152	NA	NA
UHGV-0089426_2	Structural annotation	PF13783, MF_01122	NA	NA
UHGV-0089426_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0089426_3	UniRef90	UniRef90_A0A4Q2K3G5	XRE family transcriptional regulator	NA
UHGV-0089426_3	eggNOG-mapper	742742.HMPREF9452_01329	Helix-turn-helix	NA
UHGV-0089426_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0089426_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0089426_3	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0089426_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0089426_4	UniRef90	UniRef90_UPI001D071C9E	helix-turn-helix transcriptional regulator	NA
UHGV-0089426_4	eggNOG-mapper	439375.Oant_0669	Helix-turn-helix XRE-family like proteins	NA
UHGV-0089426_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0089426_4	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0089426_4	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0089426_7	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-0089426_10	PHROG	phrog_24189	NA	unknown function
UHGV-0089426_10	UniRef90	UniRef90_A0A4Q2K0F6	NA	NA
UHGV-0089426_10	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-0089426_10	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0089426_12	PHROG	phrog_3205	NA	unknown function
UHGV-0089426_12	eggNOG-mapper	1121342.AUCO01000012_gene1713	NA	NA
UHGV-0089426_13	PHROG	phrog_21525	NA	unknown function
UHGV-0089426_16	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0089426_16	UniRef90	UniRef90_A0A414EU32	NA	NA
UHGV-0089426_16	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-0089426_16	Pfam	PF11753	NA	DUF3310
UHGV-0089426_16	Structural annotation	PF11753	NA	NA
UHGV-0089426_19	KOfam	K14059	int; integrase	NA
UHGV-0089426_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0089426_19	UniRef90	UniRef90_A0A4Q2K1M9	Site-specific integrase	NA
UHGV-0089426_19	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-0089426_19	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0089426_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0089426_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0089426_19	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0089426_20	UniRef90	UniRef90_UPI00103173DD	integration host factor	NA
UHGV-0089426_20	eggNOG-mapper	1381751.JAJB01000023_gene1732	integration host factor	NA
UHGV-0089426_20	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0089426_20	COG	COG0099	Ribosomal protein S13	NA
UHGV-0089426_20	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0089426_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0089426_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0089426_22	UniRef90	UniRef90_A0A414EU69	Single-stranded DNA-binding protein	NA
UHGV-0089426_22	eggNOG-mapper	1034345.CAEM01000002_gene1212	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0089426_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0089426_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0089426_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0089426_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0089426_22	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0089426_23	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0089426_23	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0089426_23	UniRef90	UniRef90_A0A374TU31	dUTP diphosphatase	NA
UHGV-0089426_23	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0089426_23	Pfam	PF00692	dUTPase	dUTPase
UHGV-0089426_23	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0089426_23	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0089426_23	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0089426_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0089426_24	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-0089426_24	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0089426_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0089426_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0089426_25	UniRef90	UniRef90_A0A4Q2K147	HNH endonuclease	NA
UHGV-0089426_25	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-0089426_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0089426_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0089426_26	PHROG	phrog_1066	NA	unknown function
UHGV-0089426_26	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0089426_26	Structural annotation	TIGR01558	NA	NA
UHGV-0089426_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0089426_27	UniRef90	UniRef90_A0A374TTV6	Terminase large subunit	NA
UHGV-0089426_27	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-0089426_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0089426_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0089426_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0089426_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0089426_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0089426_28	UniRef90	UniRef90_A0A4Q2K609	Phage portal protein	NA
UHGV-0089426_28	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-0089426_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0089426_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0089426_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0089426_29	KOfam	K06904	NA	NA
UHGV-0089426_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0089426_29	UniRef90	UniRef90_A0A4Q2K446	HK97 family phage prohead protease	NA
UHGV-0089426_29	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0089426_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0089426_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0089426_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0089426_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0089426_30	UniRef90	UniRef90_A0A4Q2K3E6	Phage major capsid protein	NA
UHGV-0089426_30	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-0089426_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0089426_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0089426_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0089426_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0089426_31	PHROG	phrog_5223	neck protein	connector
UHGV-0089426_31	UniRef90	UniRef90_A0A4Q2K0G6	DNA-packaging protein	NA
UHGV-0089426_31	eggNOG-mapper	1094508.Tsac_2423	NA	NA
UHGV-0089426_31	Structural annotation	TIGR01560	NA	NA
UHGV-0089426_32	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0089426_32	UniRef90	UniRef90_A0A6N7RLQ4	Phage head-tail adapter protein	NA
UHGV-0089426_32	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-0089426_32	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0089426_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0089426_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0089426_34	eggNOG-mapper	411473.RUMCAL_01153	NA	NA
UHGV-0089426_34	Structural annotation	PF05657	NA	NA
UHGV-0089426_35	PHROG	phrog_88	major tail protein	tail
UHGV-0089426_35	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-0089426_35	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-0089426_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0089426_35	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0089426_36	Structural annotation	PF12363	NA	NA
UHGV-0089426_37	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0089426_37	UniRef90	UniRef90_A0A374TRG7	PhageMin_Tail domain-containing protein	NA
UHGV-0089426_37	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-0089426_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0089426_37	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0089426_37	Structural annotation	COG5280	NA	NA
UHGV-0089426_38	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0089426_38	UniRef90	UniRef90_B6GDH4	Putative phage tail component domain protein	NA
UHGV-0089426_38	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-0089426_38	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0089426_38	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0089426_38	COG	COG4722	Phage-related protein YomH	NA
UHGV-0089426_38	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0089426_39	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0089426_39	UniRef90	UniRef90_A0A374TT20	Prophage_tail domain-containing protein	NA
UHGV-0089426_39	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-0089426_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0089426_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0089426_39	COG	COG4926	Phage-related protein	NA
UHGV-0089426_39	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0089426_40	eggNOG-mapper	445975.COLSTE_02152	NA	NA
UHGV-0089426_41	eggNOG-mapper	445975.COLSTE_02151	NA	NA