UHGV-0089576

Genome information

Genome length 26,522 bps

CDS count 32

Completeness 75.84% (medium-quality)

geNomad score 0.8674

Prediction confidence Confident

Genome information
Genome ID	UHGV-0089576
vOTU ID	vOTU-042142
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_177307
BioSample	SAMEA3449180
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.8674
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.86
Jumbo phage	No

Genome content
Genome length	26,522 bps
GC content	39.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	86.09%
Average CDS length	715.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0089576_3	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0089576_3	UniRef90	UniRef90_R6GQ75	Phage DNA methylase	NA
UHGV-0089576_3	eggNOG-mapper	1154860.SAG0136_06270	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0089576_3	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0089576_3	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0089576_3	COG	COG0863	DNA modification methylase	NA
UHGV-0089576_3	Structural annotation	PF02195, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0089576_4	PHROG	phrog_13321	NA	unknown function
UHGV-0089576_4	UniRef90	UniRef90_A0A316L5W6	Radical SAM protein	NA
UHGV-0089576_4	eggNOG-mapper	748224.HMPREF9436_03343	DNA photolyase activity	NA
UHGV-0089576_4	COG	COG1533	DNA repair photolyase	NA
UHGV-0089576_4	Structural annotation	PF20903, MF_00660, NF033668, COG1180	NA	NA
UHGV-0089576_5	PHROG	phrog_13845	NA	unknown function
UHGV-0089576_5	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0089576_5	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0089576_6	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0089576_6	UniRef90	UniRef90_UPI001F2E3C42	terminase large subunit	NA
UHGV-0089576_6	eggNOG-mapper	1399942.U3PBG5_9CAUD	Phage Terminase	NA
UHGV-0089576_6	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0089576_6	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0089576_6	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0089576_7	PHROG	phrog_12	portal protein	head and packaging
UHGV-0089576_7	UniRef90	UniRef90_UPI0009E8B747	phage portal protein	NA
UHGV-0089576_7	eggNOG-mapper	1414720.CBYM010000001_gene697	Phage portal protein, HK97 family	NA
UHGV-0089576_7	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0089576_7	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0089576_7	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0089576_7	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0089576_8	PHROG	phrog_4936	transcriptional regulator	transcription regulation
UHGV-0089576_8	UniRef90	UniRef90_R6HCE3	Prophage antirepressor	NA
UHGV-0089576_8	eggNOG-mapper	572544.Ilyop_1031	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0089576_8	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0089576_8	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0089576_8	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0089576_9	KOfam	K06904	NA	NA
UHGV-0089576_9	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0089576_9	UniRef90	UniRef90_R6GRF8	Phage prohead protease HK97 family	NA
UHGV-0089576_9	eggNOG-mapper	1414720.CBYM010000002_gene573	Phage prohead protease, HK97 family	NA
UHGV-0089576_9	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0089576_9	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0089576_9	COG	COG3740	Phage head maturation protease	NA
UHGV-0089576_9	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0089576_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0089576_10	UniRef90	UniRef90_UPI001961BFFE	phage major capsid protein	NA
UHGV-0089576_10	eggNOG-mapper	903814.ELI_1299	Phage capsid family	NA
UHGV-0089576_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0089576_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0089576_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0089576_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0089576_11	PHROG	phrog_12102	NA	unknown function
UHGV-0089576_11	UniRef90	UniRef90_UPI00058C5FBA	head fiber protein	NA
UHGV-0089576_11	eggNOG-mapper	1410653.JHVC01000011_gene986	NA	NA
UHGV-0089576_12	UniRef90	UniRef90_UPI001BA8BAD6	head-tail connector protein	NA
UHGV-0089576_12	eggNOG-mapper	1399942.U3PCS3_9CAUD	NA	NA
UHGV-0089576_12	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0089576_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0089576_13	PHROG	phrog_25	head closure Hc1	connector
UHGV-0089576_13	UniRef90	UniRef90_A0A371ATA0	Head-tail adaptor protein	NA
UHGV-0089576_13	eggNOG-mapper	1262449.CP6013_1044	Phage head-tail joining protein	NA
UHGV-0089576_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0089576_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0089576_13	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0089576_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0089576_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0089576_14	UniRef90	UniRef90_R6GE33	Phage protein HK97 gp10 family	NA
UHGV-0089576_14	eggNOG-mapper	1262449.CP6013_1045	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0089576_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0089576_14	Structural annotation	TIGR01725	NA	NA
UHGV-0089576_15	PHROG	phrog_78	tail terminator	connector
UHGV-0089576_15	eggNOG-mapper	1399942.U3PDS3_9CAUD	NA	NA
UHGV-0089576_16	PHROG	phrog_88	major tail protein	tail
UHGV-0089576_16	UniRef90	UniRef90_R6GFP9	Putative major tail protein	NA
UHGV-0089576_16	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0089576_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0089576_16	COG	COG5492	NA	NA
UHGV-0089576_16	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0089576_17	PHROG	phrog_2115	tail protein	tail
UHGV-0089576_17	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-0089576_17	Structural annotation	PF11836	NA	NA
UHGV-0089576_19	PHROG	phrog_2268	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0089576_19	UniRef90	UniRef90_R6GJE0	Antitoxin	NA
UHGV-0089576_19	eggNOG-mapper	610130.Closa_1754	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0089576_19	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0089576_19	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0089576_19	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0089576_19	Structural annotation	PF02604, TIGR01552, COG2161	NA	NA
UHGV-0089576_20	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-0089576_20	PHROG	phrog_2455	NA	unknown function
UHGV-0089576_20	UniRef90	UniRef90_UPI0004272534	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0089576_20	eggNOG-mapper	1280698.AUJS01000003_gene2577	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0089576_20	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0089576_20	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-0089576_20	Structural annotation	PF05016, TIGR00053, COG3668	NA	NA
UHGV-0089576_21	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0089576_21	eggNOG-mapper	138119.DSY2176	tape measure	NA
UHGV-0089576_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0089576_21	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0089576_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0089576_22	UniRef90	UniRef90_UPI0005750BC7	phage tail family protein	NA
UHGV-0089576_22	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-0089576_22	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0089576_22	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0089576_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-0089576_22	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0089576_23	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0089576_23	UniRef90	UniRef90_A0A1M6KY09	Phage minor structural protein, N-terminal region	NA
UHGV-0089576_23	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0089576_23	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0089576_23	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0089576_23	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0089576_26	PHROG	phrog_23008	tail fiber protein	tail
UHGV-0089576_26	eggNOG-mapper	500637.PROVRUST_04953	Phage tail-collar fibre protein	NA
UHGV-0089576_26	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0089576_26	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0089576_28	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0089576_28	PHROG	phrog_435	endolysin	lysis
UHGV-0089576_28	UniRef90	UniRef90_R6GHD8	SPOR domain-containing protein	NA
UHGV-0089576_28	eggNOG-mapper	1408437.JNJN01000040_gene194	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0089576_28	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0089576_28	Pfam	PF05036	SPOR domain	SPOR
UHGV-0089576_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0089576_28	Structural annotation	PF01520, PF18342, MF_00562, TIGR02883, COG0860, COG4991	NA	NA