UHGV-0089625

Genome information

Genome length 36,708 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0089625
vOTU ID	vOTU-011050
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_170958
BioSample	SAMEA3136645
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.65
Jumbo phage	No

Genome content
Genome length	36,708 bps
GC content	55.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	88.79%
Average CDS length	596.56 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0089625_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0089625_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0089625_1	UniRef90	UniRef90_A0A417HSQ2	Recombinase family protein	NA
UHGV-0089625_1	eggNOG-mapper	1356854.N007_18555	Recombinase	NA
UHGV-0089625_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0089625_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0089625_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0089625_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0089625_4	UniRef90	UniRef90_A0A4R1QMH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0089625_4	eggNOG-mapper	445972.ANACOL_00210	NA	NA
UHGV-0089625_4	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0089625_4	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0089625_5	PHROG	phrog_1129	holin	lysis
UHGV-0089625_5	UniRef90	UniRef90_A0A8J6J3M3	Phage holin family protein	NA
UHGV-0089625_5	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0089625_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0089625_5	Structural annotation	PF06946	NA	NA
UHGV-0089625_6	PHROG	phrog_1863	NA	unknown function
UHGV-0089625_6	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0089625_6	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0089625_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0089625_7	PHROG	phrog_5182	endolysin	lysis
UHGV-0089625_7	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0089625_7	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0089625_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0089625_7	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0089625_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0089625_7	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0089625_8	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0089625_8	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0089625_8	Structural annotation	PF18998, PF20328	NA	NA
UHGV-0089625_10	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0089625_11	PHROG	phrog_13589	NA	unknown function
UHGV-0089625_11	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0089625_12	PHROG	phrog_31538	NA	unknown function
UHGV-0089625_13	PHROG	phrog_15594	NA	unknown function
UHGV-0089625_13	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0089625_13	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0089625_14	PHROG	phrog_24267	NA	unknown function
UHGV-0089625_14	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0089625_14	COG	COG4675	Phage tail collar domain	NA
UHGV-0089625_14	Structural annotation	COG4675	NA	NA
UHGV-0089625_15	PHROG	phrog_38190	NA	unknown function
UHGV-0089625_15	eggNOG-mapper	762211.BSTEL_0610	NA	NA
UHGV-0089625_16	PHROG	phrog_6616	tail protein	tail
UHGV-0089625_16	Structural annotation	PF13550, PF16466, NF033848, COG3500	NA	NA
UHGV-0089625_17	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0089625_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0089625_18	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0089625_18	COG	COG1511	NA	NA
UHGV-0089625_19	PHROG	phrog_706	NA	unknown function
UHGV-0089625_19	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0089625_19	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0089625_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0089625_19	Structural annotation	PF06854	NA	NA
UHGV-0089625_20	PHROG	phrog_11299	NA	unknown function
UHGV-0089625_20	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0089625_20	Structural annotation	PF10666	NA	NA
UHGV-0089625_21	PHROG	phrog_3099	NA	unknown function
UHGV-0089625_21	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0089625_21	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0089625_22	PHROG	phrog_3266	tail completion	connector
UHGV-0089625_22	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0089625_22	Structural annotation	PF12691	NA	NA
UHGV-0089625_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0089625_23	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0089625_23	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0089625_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0089625_23	Structural annotation	PF11114	NA	NA
UHGV-0089625_24	PHROG	phrog_3366	NA	unknown function
UHGV-0089625_24	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0089625_25	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0089625_25	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0089625_26	PHROG	phrog_267	major head protein	head and packaging
UHGV-0089625_26	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-0089625_26	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0089625_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0089625_27	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0089625_27	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0089625_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0089625_27	Structural annotation	PF06810	NA	NA
UHGV-0089625_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0089625_29	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0089625_29	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0089625_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0089625_29	Pfam	PF21814	NA	DUF6883
UHGV-0089625_29	COG	COG2369	NA	NA
UHGV-0089625_29	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0089625_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0089625_30	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0089625_30	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0089625_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0089625_31	PHROG	phrog_1233	NA	unknown function
UHGV-0089625_31	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0089625_31	Structural annotation	PF13058	NA	NA
UHGV-0089625_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0089625_32	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0089625_32	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0089625_32	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0089625_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0089625_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0089625_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0089625_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0089625_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0089625_32	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0089625_33	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0089625_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0089625_34	UniRef90	UniRef90_A0A7D6VSS6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0089625_34	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0089625_34	Pfam	PF07374	NA	DUF1492
UHGV-0089625_34	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0089625_36	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0089625_36	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-0089625_36	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0089625_36	Pfam	PF14359	NA	DUF4406
UHGV-0089625_36	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0089625_36	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0089625_37	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0089625_37	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0089625_37	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0089625_37	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0089625_37	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0089625_37	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0089625_37	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0089625_37	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0089625_38	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0089625_39	KOfam	K03700	recU; recombination protein U	NA
UHGV-0089625_39	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0089625_39	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-0089625_39	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0089625_39	Pfam	PF03838	Recombination protein U	RecU
UHGV-0089625_39	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0089625_39	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0089625_40	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0089625_40	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0089625_40	Structural annotation	PF21578	NA	NA
UHGV-0089625_43	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0089625_43	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0089625_43	UniRef90	UniRef90_UPI0018F33479	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0089625_43	eggNOG-mapper	268407.PWYN_12320	AbrB family transcriptional regulator	NA
UHGV-0089625_43	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0089625_43	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0089625_43	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0089625_43	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0089625_45	PHROG	phrog_5663	NA	unknown function
UHGV-0089625_45	UniRef90	UniRef90_UPI001EDDD6D5	NA	NA
UHGV-0089625_45	eggNOG-mapper	390235.PputW619_1358	NA	NA
UHGV-0089625_45	Pfam	PF10386	NA	DUF2441
UHGV-0089625_47	UniRef90	UniRef90_A0A357TPS2	DNA-binding protein	NA
UHGV-0089625_47	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-0089625_47	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0089625_48	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0089625_48	UniRef90	UniRef90_UPI0013ECC13D	helix-turn-helix domain-containing protein	NA
UHGV-0089625_48	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0089625_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0089625_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0089625_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0089625_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0089625_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0089625_49	UniRef90	UniRef90_UPI000E31F980	helix-turn-helix domain-containing protein	NA
UHGV-0089625_49	eggNOG-mapper	1125712.HMPREF1316_2394	Peptidase S24-like	NA
UHGV-0089625_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0089625_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0089625_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0089625_49	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0089625_50	PHROG	phrog_1914	NA	unknown function
UHGV-0089625_50	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-0089625_50	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0089625_50	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0089625_50	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0089625_50	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0089625_51	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0089625_51	UniRef90	UniRef90_UPI001EDE047F	phage minor capsid protein	NA
UHGV-0089625_51	eggNOG-mapper	679192.HMPREF9013_1325	NA	NA
UHGV-0089625_51	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0089625_52	Structural annotation	PF21227	NA	NA
UHGV-0089625_53	PHROG	phrog_5978	NA	unknown function
UHGV-0089625_53	UniRef90	UniRef90_A0A372UZA0	Fic family protein	NA
UHGV-0089625_53	eggNOG-mapper	479437.Elen_3019	Filamentation induced by cAMP protein fic	NA
UHGV-0089625_53	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0089625_53	COG	COG3177	Fic family protein	NA
UHGV-0089625_53	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0089625_54	KOfam	K14059	int; integrase	NA
UHGV-0089625_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0089625_54	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-0089625_54	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0089625_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0089625_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0089625_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0089625_54	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0089625_55	KOfam	K01243	mtnN, mtn, pfs; adenosylhomocysteine nucleosidase [EC:3.2.2.9]	NA
UHGV-0089625_55	UniRef90	UniRef90_A0A3D1V9T7	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (Fragment)	NA
UHGV-0089625_55	eggNOG-mapper	1171373.PACID_16700	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively	NA
UHGV-0089625_55	Pfam	PF01048	Phosphorylase superfamily	PNP_UDP_1
UHGV-0089625_55	COG	COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	NA