UHGV-0089647

Genome information

Genome length 35,678 bps

CDS count 56

Completeness 93.25% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0089647
vOTU ID	vOTU-061851
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_174821
BioSample	SAMEA3360665
Country	Bangladesh
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.25% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.25
Jumbo phage	No

Genome content
Genome length	35,678 bps
GC content	36.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.74%
Average CDS length	595.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0089647_1	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0089647_1	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0089647_1	UniRef90	UniRef90_C2CG14	Phage antirepressor protein	NA
UHGV-0089647_1	eggNOG-mapper	525255.HMPREF0077_0424	BRO family, N-terminal domain	NA
UHGV-0089647_1	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0089647_1	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0089647_1	COG	COG3617	Prophage antirepressor	NA
UHGV-0089647_1	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0089647_3	eggNOG-mapper	525919.Apre_0802	NA	NA
UHGV-0089647_4	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0089647_4	UniRef90	UniRef90_UPI000C06D229	YqaJ viral recombinase family protein	NA
UHGV-0089647_4	eggNOG-mapper	525255.HMPREF0077_0419	YqaJ-like viral recombinase domain	NA
UHGV-0089647_4	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0089647_4	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0089647_4	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0089647_4	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0089647_6	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0089647_6	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0089647_6	UniRef90	UniRef90_UPI001EE3E15E	recombinase RecT	NA
UHGV-0089647_6	eggNOG-mapper	525255.HMPREF0077_0417	RecT family	NA
UHGV-0089647_6	Pfam	PF03837	RecT family	RecT
UHGV-0089647_6	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0089647_6	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0089647_6	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0089647_7	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0089647_7	PHROG	phrog_16986	NA	unknown function
UHGV-0089647_7	UniRef90	UniRef90_UPI001931BC05	HNH endonuclease	NA
UHGV-0089647_7	eggNOG-mapper	411490.ANACAC_00801	endonuclease activity	NA
UHGV-0089647_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0089647_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0089647_7	Structural annotation	PF01844, TIGR02646	NA	NA
UHGV-0089647_8	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0089647_8	UniRef90	UniRef90_A0A837SVL8	Phage replication initiation protein	NA
UHGV-0089647_8	eggNOG-mapper	1033733.CAEK01000007_gene1675	DnaD domain protein	NA
UHGV-0089647_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0089647_10	eggNOG-mapper	938278.CAJO01000051_gene795	NA	NA
UHGV-0089647_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0089647_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0089647_11	UniRef90	UniRef90_UPI0019340B14	single-stranded DNA-binding protein	NA
UHGV-0089647_11	eggNOG-mapper	1284686.HMPREF1630_07690	Single-stranded DNA-binding protein	NA
UHGV-0089647_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0089647_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0089647_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0089647_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0089647_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0089647_12	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0089647_12	UniRef90	UniRef90_UPI001CC048CF	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0089647_12	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0089647_12	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0089647_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0089647_12	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0089647_15	PHROG	phrog_1485	NA	unknown function
UHGV-0089647_15	UniRef90	UniRef90_UPI001031005C	nucleotide modification associated domain-containing protein	NA
UHGV-0089647_15	eggNOG-mapper	938278.CAJO01000051_gene805	NA	NA
UHGV-0089647_15	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0089647_15	Structural annotation	PF07659	NA	NA
UHGV-0089647_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0089647_16	UniRef90	UniRef90_UPI001932EF99	NA	NA
UHGV-0089647_16	eggNOG-mapper	525919.Apre_0829	NA	NA
UHGV-0089647_16	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0089647_17	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0089647_17	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0089647_17	UniRef90	UniRef90_UPI001EE49ED6	terminase small subunit	NA
UHGV-0089647_17	eggNOG-mapper	1118055.CAGU01000029_gene18	Terminase small subunit	NA
UHGV-0089647_17	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0089647_17	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0089647_17	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0089647_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0089647_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0089647_18	UniRef90	UniRef90_A0A233V9T4	Terminase	NA
UHGV-0089647_18	eggNOG-mapper	997350.HMPREF9129_1658	Terminase RNAseH like domain	NA
UHGV-0089647_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0089647_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0089647_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0089647_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0089647_18	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0089647_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0089647_19	UniRef90	UniRef90_F0H2C5	Conserved domain protein	NA
UHGV-0089647_19	eggNOG-mapper	1118055.CAGU01000029_gene12	NA	NA
UHGV-0089647_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0089647_20	UniRef90	UniRef90_C7RHA2	Phage portal protein, SPP1 family	NA
UHGV-0089647_20	eggNOG-mapper	525919.Apre_0835	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0089647_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0089647_20	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0089647_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0089647_21	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0089647_21	UniRef90	UniRef90_C7RHA3	Putative head morphogenesis protein SPP1 gp7	NA
UHGV-0089647_21	eggNOG-mapper	525919.Apre_0836	Phage Mu protein F like protein	NA
UHGV-0089647_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0089647_21	COG	COG2369	NA	NA
UHGV-0089647_21	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0089647_22	PHROG	phrog_918	NA	unknown function
UHGV-0089647_22	UniRef90	UniRef90_UPI001CCDC3EB	NA	NA
UHGV-0089647_22	eggNOG-mapper	525919.Apre_0838	NA	NA
UHGV-0089647_22	Pfam	PF19791	NA	DUF6275
UHGV-0089647_22	Structural annotation	PF19791	NA	NA
UHGV-0089647_23	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0089647_23	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0089647_23	UniRef90	UniRef90_C2BG33	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0089647_23	eggNOG-mapper	525254.HMPREF0072_1303	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0089647_23	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0089647_23	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0089647_23	COG	COG0338	DNA-adenine methylase	NA
UHGV-0089647_23	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0089647_24	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0089647_24	UniRef90	UniRef90_UPI0015C40F41	NA	NA
UHGV-0089647_24	eggNOG-mapper	525919.Apre_0839	NA	NA
UHGV-0089647_24	Pfam	PF14265	NA	DUF4355
UHGV-0089647_24	Structural annotation	PF14265	NA	NA
UHGV-0089647_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0089647_25	UniRef90	UniRef90_UPI00092FF4F5	phage major capsid protein	NA
UHGV-0089647_25	eggNOG-mapper	525919.Apre_0840	Phage capsid family	NA
UHGV-0089647_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0089647_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0089647_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0089647_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0089647_27	PHROG	phrog_1161	head-tail adaptor	connector
UHGV-0089647_27	UniRef90	UniRef90_F9MRG8	Conserved domain protein	NA
UHGV-0089647_27	eggNOG-mapper	525919.Apre_0842	NA	NA
UHGV-0089647_28	PHROG	phrog_222	tail protein	tail
UHGV-0089647_28	eggNOG-mapper	525919.Apre_0843	NA	NA
UHGV-0089647_29	PHROG	phrog_1661	NA	unknown function
UHGV-0089647_29	eggNOG-mapper	525919.Apre_0844	NA	NA
UHGV-0089647_29	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0089647_30	PHROG	phrog_1232	NA	unknown function
UHGV-0089647_30	UniRef90	UniRef90_F9MRG5	Conserved domain protein	NA
UHGV-0089647_30	eggNOG-mapper	525919.Apre_0845	NA	NA
UHGV-0089647_30	Structural annotation	PF08873	NA	NA
UHGV-0089647_31	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0089647_31	UniRef90	UniRef90_UPI0008381EAD	NA	NA
UHGV-0089647_31	eggNOG-mapper	525919.Apre_0846	NA	NA
UHGV-0089647_31	Pfam	PF11863	NA	DUF3383
UHGV-0089647_31	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0089647_32	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0089647_32	UniRef90	UniRef90_F9MRG3	Conserved domain protein	NA
UHGV-0089647_32	eggNOG-mapper	525919.Apre_0847	NA	NA
UHGV-0089647_32	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-0089647_33	PHROG	phrog_1778	NA	unknown function
UHGV-0089647_33	eggNOG-mapper	525919.Apre_0848	NA	NA
UHGV-0089647_33	Structural annotation	PF16462	NA	NA
UHGV-0089647_35	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0089647_35	UniRef90	UniRef90_C7RHB6	Phage tail tape measure protein, TP901 family	NA
UHGV-0089647_35	eggNOG-mapper	525919.Apre_0849	Phage-related minor tail protein	NA
UHGV-0089647_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0089647_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0089647_35	COG	COG5283	Phage-related tail protein	NA
UHGV-0089647_35	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0089647_36	PHROG	phrog_1517	endolysin	lysis
UHGV-0089647_36	UniRef90	UniRef90_A0A398BC76	LysM domain-containing protein	NA
UHGV-0089647_36	eggNOG-mapper	525919.Apre_0850	NA	NA
UHGV-0089647_36	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0089647_37	PHROG	phrog_1264	NA	unknown function
UHGV-0089647_37	eggNOG-mapper	525919.Apre_0851	NA	NA
UHGV-0089647_38	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0089647_38	UniRef90	UniRef90_A0A090I0A2	Conserved domain protein	NA
UHGV-0089647_38	eggNOG-mapper	525919.Apre_0852	NA	NA
UHGV-0089647_38	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0089647_39	UniRef90	UniRef90_C7RHC0	Gp138_N domain-containing protein	NA
UHGV-0089647_39	eggNOG-mapper	525919.Apre_0853	Baseplate assembly protein	NA
UHGV-0089647_39	Pfam	PF18352	NA	Gp138_N
UHGV-0089647_39	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0089647_40	PHROG	phrog_120	baseplate protein	tail
UHGV-0089647_40	UniRef90	UniRef90_UPI0009305025	NA	NA
UHGV-0089647_40	eggNOG-mapper	525919.Apre_0854	NA	NA
UHGV-0089647_40	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0089647_41	PHROG	phrog_6	baseplate protein	tail
UHGV-0089647_41	UniRef90	UniRef90_C7RHC2	Baseplate_J domain-containing protein	NA
UHGV-0089647_41	eggNOG-mapper	525919.Apre_0855	Baseplate J-like protein	NA
UHGV-0089647_41	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0089647_41	COG	COG3299	NA	NA
UHGV-0089647_41	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0089647_42	PHROG	phrog_1160	baseplate protein	tail
UHGV-0089647_42	UniRef90	UniRef90_U7USB8	PF11041 domain protein	NA
UHGV-0089647_42	eggNOG-mapper	525919.Apre_0856	NA	NA
UHGV-0089647_42	Pfam	PF11041	NA	DUF2612
UHGV-0089647_43	PHROG	phrog_7177	NA	unknown function
UHGV-0089647_43	eggNOG-mapper	525919.Apre_0857	NA	NA
UHGV-0089647_44	UniRef90	UniRef90_UPI0010458139	inorganic polyphosphate kinase	NA
UHGV-0089647_44	eggNOG-mapper	525919.Apre_0858	NA	NA
UHGV-0089647_45	PHROG	phrog_36643	NA	unknown function
UHGV-0089647_45	UniRef90	UniRef90_G4D5F3	TNFR-Cys domain-containing protein	NA
UHGV-0089647_45	eggNOG-mapper	525919.Apre_0859	cell wall binding repeat	NA
UHGV-0089647_45	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0089647_45	Structural annotation	PF19789, PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-0089647_46	UniRef90	UniRef90_C7RHC7	Myosin heavy chain	NA
UHGV-0089647_47	PHROG	phrog_30034	NA	unknown function
UHGV-0089647_47	UniRef90	UniRef90_A0A090I2J2	Chitin-binding domain of Chi A1-like proteins	NA
UHGV-0089647_47	eggNOG-mapper	1154860.SAG0136_08155	NA	NA
UHGV-0089647_47	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0089647_48	PHROG	phrog_32779	NA	unknown function
UHGV-0089647_48	eggNOG-mapper	862517.HMPREF9225_1624	Collagen triple helix repeat (20 copies)	NA
UHGV-0089647_48	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0089647_51	PHROG	phrog_998	endolysin	lysis
UHGV-0089647_51	UniRef90	UniRef90_UPI0019313E0E	SH3 domain-containing protein	NA
UHGV-0089647_51	eggNOG-mapper	525919.Apre_1259	domain protein	NA
UHGV-0089647_51	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0089647_51	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0089647_51	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0089647_51	Structural annotation	PF08460, NF033202, COG3942	NA	NA
UHGV-0089647_52	PHROG	phrog_881	holin	lysis
UHGV-0089647_52	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0089647_52	eggNOG-mapper	525919.Apre_0865	Putative phage holin Dp-1	NA
UHGV-0089647_52	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0089647_52	Structural annotation	PF16938	NA	NA
UHGV-0089647_54	eggNOG-mapper	610130.Closa_0766	NA	NA
UHGV-0089647_56	eggNOG-mapper	1121947.AUHK01000041_gene154	NA	NA