UHGV-0089658

Genome information

Genome length 10,302 bps

CDS count 16

Completeness 80.49% (medium-quality)

geNomad score 0.9267

Prediction confidence Confident

Genome information
Genome ID	UHGV-0089658
vOTU ID	vOTU-018911
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_180943
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9267
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.98
Jumbo phage	No

Genome content
Genome length	10,302 bps
GC content	51.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	16
CDS density	88.50%
Average CDS length	575.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0089658_1	PHROG	phrog_859	portal protein	head and packaging
UHGV-0089658_1	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0089658_1	eggNOG-mapper	1078020.KEK_08242	Phage Mu protein F like protein	NA
UHGV-0089658_1	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0089658_1	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0089658_6	PHROG	phrog_15404	NA	unknown function
UHGV-0089658_6	eggNOG-mapper	397291.C804_01613	NA	NA
UHGV-0089658_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0089658_7	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0089658_7	UniRef90	UniRef90_R9JJE2	PBSX family phage terminase, large subunit	NA
UHGV-0089658_7	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0089658_7	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0089658_7	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0089658_7	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0089658_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-0089658_7	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0089658_8	UniRef90	UniRef90_A0A3D1LEC5	VPS37 C-terminal domain-containing protein	NA
UHGV-0089658_8	eggNOG-mapper	485916.Dtox_3705	NA	NA
UHGV-0089658_8	Structural annotation	PF13022	NA	NA
UHGV-0089658_9	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0089658_9	eggNOG-mapper	742738.HMPREF9460_00725	NA	NA
UHGV-0089658_10	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0089658_10	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0089658_10	UniRef90	UniRef90_UPI001C123A0E	bifunctional DNA primase/polymerase	NA
UHGV-0089658_10	eggNOG-mapper	1411123.JQNH01000001_gene1798	AAA domain	NA
UHGV-0089658_10	Pfam	PF13481	AAA domain	AAA_25
UHGV-0089658_10	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0089658_10	Structural annotation	PF03796, MF_04154, TIGR02237, TIGR01391, COG3598, COG4643	NA	NA
UHGV-0089658_11	UniRef90	UniRef90_UPI001C02DF0D	helix-turn-helix domain-containing protein	NA
UHGV-0089658_11	eggNOG-mapper	537007.BLAHAN_06453	sequence-specific DNA binding	NA
UHGV-0089658_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0089658_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0089658_11	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0089658_12	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0089658_12	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0089658_12	UniRef90	UniRef90_R5F123	HTH cro/C1-type domain-containing protein	NA
UHGV-0089658_12	eggNOG-mapper	1415774.U728_2385	helix-turn-helix	NA
UHGV-0089658_12	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0089658_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0089658_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0089658_12	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0089658_13	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0089658_13	UniRef90	UniRef90_A0A3D3Y5M9	DNA-binding protein	NA
UHGV-0089658_13	eggNOG-mapper	877420.ATVW01000045_gene2399	KilA-N	NA
UHGV-0089658_13	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0089658_13	Structural annotation	PF04383	NA	NA
UHGV-0089658_14	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0089658_14	UniRef90	UniRef90_UPI001C00936D	DNA-binding protein	NA
UHGV-0089658_14	eggNOG-mapper	428125.CLOLEP_01836	COG NOG08824 non supervised orthologous group	NA
UHGV-0089658_15	KOfam	K14059	int; integrase	NA
UHGV-0089658_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0089658_15	UniRef90	UniRef90_UPI0019598861	site-specific integrase	NA
UHGV-0089658_15	eggNOG-mapper	718252.FP2_06900	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0089658_15	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0089658_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0089658_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0089658_15	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0089658_16	KOfam	K14059	int; integrase	NA
UHGV-0089658_16	UniRef90	UniRef90_R6GHP1	Site-specific recombinase phage integrase family	NA
UHGV-0089658_16	eggNOG-mapper	411467.BACCAP_04089	Belongs to the 'phage' integrase family	NA
UHGV-0089658_16	COG	COG0582	Integrase/recombinase, includes phage integrase	NA