UHGV-0089725

Genome information

Genome length 27,774 bps

CDS count 40

Completeness 71.30% (medium-quality)

geNomad score 0.9695

Prediction confidence Confident

Genome information
Genome ID	UHGV-0089725
vOTU ID	vOTU-023419
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_193447
BioSample	SAMEA3449268
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9695
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.52
Jumbo phage	No

Genome content
Genome length	27,774 bps
GC content	49.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	91.19%
Average CDS length	636.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0089725_2	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0089725_2	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0089725_2	UniRef90	UniRef90_A0A6N8HZR2	DNA helicase	NA
UHGV-0089725_2	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0089725_2	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0089725_2	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0089725_2	COG	COG0305	Replicative DNA helicase	NA
UHGV-0089725_2	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0089725_3	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0089725_3	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0089725_3	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0089725_3	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0089725_3	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0089725_3	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0089725_7	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0089725_7	UniRef90	UniRef90_A0A3D4CBP5	NA	NA
UHGV-0089725_7	eggNOG-mapper	1204534.J9QD24_9CAUD	NA	NA
UHGV-0089725_7	Pfam	PF12961	NA	DUF3850
UHGV-0089725_7	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0089725_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0089725_10	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0089725_10	eggNOG-mapper	1540257.JQMW01000004_gene433	NA	NA
UHGV-0089725_11	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0089725_11	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0089725_11	UniRef90	UniRef90_UPI000681376F	terminase small subunit	NA
UHGV-0089725_11	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0089725_11	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0089725_11	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0089725_11	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0089725_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0089725_12	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0089725_12	UniRef90	UniRef90_UPI0006822C99	terminase	NA
UHGV-0089725_12	eggNOG-mapper	645991.Sgly_0335	Phage terminase, large subunit, PBSX family	NA
UHGV-0089725_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-0089725_12	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0089725_13	PHROG	phrog_533	portal protein	head and packaging
UHGV-0089725_13	UniRef90	UniRef90_UPI00190E68B5	capsid protein	NA
UHGV-0089725_13	eggNOG-mapper	1507.HMPREF0262_01175	NA	NA
UHGV-0089725_13	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0089725_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0089725_14	UniRef90	UniRef90_UPI000A270255	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0089725_14	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-0089725_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0089725_14	COG	COG2369	NA	NA
UHGV-0089725_14	Structural annotation	PF06152	NA	NA
UHGV-0089725_15	eggNOG-mapper	903814.ELI_3212	NA	NA
UHGV-0089725_16	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0089725_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0089725_17	UniRef90	UniRef90_UPI000A271684	capsid protein	NA
UHGV-0089725_17	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0089725_17	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0089725_18	PHROG	phrog_1378	NA	unknown function
UHGV-0089725_18	eggNOG-mapper	1280692.AUJL01000027_gene2159	NA	NA
UHGV-0089725_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0089725_19	eggNOG-mapper	394503.Ccel_3042	NA	NA
UHGV-0089725_20	PHROG	phrog_8710	NA	unknown function
UHGV-0089725_20	eggNOG-mapper	1507.HMPREF0262_01181	NA	NA
UHGV-0089725_20	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0089725_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0089725_21	eggNOG-mapper	1507.HMPREF0262_01182	NA	NA
UHGV-0089725_22	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0089725_22	UniRef90	UniRef90_UPI000A26871F	minor capsid protein	NA
UHGV-0089725_22	eggNOG-mapper	717606.PaecuDRAFT_3128	NA	NA
UHGV-0089725_22	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0089725_22	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0089725_23	PHROG	phrog_820	major tail protein	tail
UHGV-0089725_23	eggNOG-mapper	1507.HMPREF0262_01184	domain, Protein	NA
UHGV-0089725_23	COG	COG5492	NA	NA
UHGV-0089725_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0089725_24	eggNOG-mapper	1123009.AUID01000002_gene2092	TerB N-terminal domain	NA
UHGV-0089725_24	COG	COG4103	Tellurite resistance protein TerB	NA
UHGV-0089725_25	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0089725_26	KOfam	K19159	yefM; antitoxin YefM	NA
UHGV-0089725_26	PHROG	phrog_10078	NA	unknown function
UHGV-0089725_26	UniRef90	UniRef90_UPI0006C78F44	type II toxin-antitoxin system Phd/YefM family antitoxin	NA
UHGV-0089725_26	eggNOG-mapper	1278306.KB906908_gene633	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0089725_26	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0089725_26	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0089725_26	Structural annotation	PF02604, NF008499, COG2161	NA	NA
UHGV-0089725_27	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-0089725_27	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0089725_27	UniRef90	UniRef90_UPI0006C7E804	Txe/YoeB family addiction module toxin	NA
UHGV-0089725_27	eggNOG-mapper	657322.FPR_21200	YoeB-like toxin of bacterial type II toxin-antitoxin system	NA
UHGV-0089725_27	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-0089725_27	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-0089725_27	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-0089725_27	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA
UHGV-0089725_28	PHROG	phrog_8300	NA	unknown function
UHGV-0089725_28	eggNOG-mapper	1507.HMPREF0262_01185	NA	NA
UHGV-0089725_28	Structural annotation	PF06896	NA	NA
UHGV-0089725_29	PHROG	phrog_8355	NA	unknown function
UHGV-0089725_29	UniRef90	UniRef90_UPI000A26E2D9	Gp15 family bacteriophage protein	NA
UHGV-0089725_29	eggNOG-mapper	1507.HMPREF0262_01186	NA	NA
UHGV-0089725_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0089725_30	eggNOG-mapper	1507.HMPREF0262_01187	phage tail tape measure protein	NA
UHGV-0089725_30	COG	COG1511	NA	NA
UHGV-0089725_31	PHROG	phrog_1194	NA	unknown function
UHGV-0089725_31	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0089725_32	PHROG	phrog_13879	NA	unknown function
UHGV-0089725_32	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0089725_32	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0089725_35	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0089725_35	PHROG	phrog_435	endolysin	lysis
UHGV-0089725_35	UniRef90	UniRef90_A0A350XYL2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0089725_35	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0089725_35	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0089725_35	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0089725_35	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-0089725_37	PHROG	phrog_297	holin	lysis
UHGV-0089725_37	UniRef90	UniRef90_UPI0009F738EC	phage holin	NA
UHGV-0089725_37	eggNOG-mapper	428125.CLOLEP_01780	COG COG5546 Small integral membrane protein	NA
UHGV-0089725_37	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0089725_37	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0089725_37	COG	COG5546	NA	NA
UHGV-0089725_37	Structural annotation	COG5546	NA	NA
UHGV-0089725_38	PHROG	phrog_3243	NA	unknown function
UHGV-0089725_38	eggNOG-mapper	266762.HQ36_01995	NA	NA
UHGV-0089725_38	Structural annotation	PF15072, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0089725_40	UniRef90	UniRef90_A0A661R309	Nudix hydrolase domain-containing protein	NA
UHGV-0089725_40	eggNOG-mapper	397287.C807_03002	dTDP biosynthetic process	NA
UHGV-0089725_40	COG	COG0125	Thymidylate kinase	NA