UHGV-0089928

Genome information

Genome length 31,683 bps

CDS count 51

Completeness 95.98% (high-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0089928
vOTU ID	vOTU-066777
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_194864
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.19
Jumbo phage	No

Genome content
Genome length	31,683 bps
GC content	43.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.02%
Average CDS length	563.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0089928_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0089928_1	PHROG	phrog_833	endolysin	lysis
UHGV-0089928_1	UniRef90	UniRef90_F3AXQ7	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0089928_1	eggNOG-mapper	411460.RUMTOR_02101	COG NOG33632 non supervised orthologous group	NA
UHGV-0089928_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0089928_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0089928_1	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0089928_2	PHROG	phrog_199	holin	lysis
UHGV-0089928_2	UniRef90	UniRef90_A5KPB6	Toxin secretion/phage lysis holin	NA
UHGV-0089928_2	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0089928_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0089928_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0089928_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0089928_3	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0089928_3	PHROG	phrog_30034	NA	unknown function
UHGV-0089928_3	UniRef90	UniRef90_A5KPB5	Carbohydrate binding domain protein	NA
UHGV-0089928_3	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0089928_3	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0089928_3	Structural annotation	PF10618	NA	NA
UHGV-0089928_4	PHROG	phrog_13141	NA	unknown function
UHGV-0089928_4	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-0089928_4	eggNOG-mapper	665950.HMPREF1025_02519	NA	NA
UHGV-0089928_4	Structural annotation	PF20747, PF17900	NA	NA
UHGV-0089928_5	PHROG	phrog_538	minor tail protein	tail
UHGV-0089928_5	UniRef90	UniRef90_UPI001C3AB50C	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0089928_5	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-0089928_5	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0089928_5	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0089928_6	UniRef90	UniRef90_UPI001EDFA8F1	phage tail protein	NA
UHGV-0089928_6	eggNOG-mapper	665950.HMPREF1025_02521	NA	NA
UHGV-0089928_6	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0089928_7	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0089928_7	UniRef90	UniRef90_A0A1C5Y9X6	Phage-related protein	NA
UHGV-0089928_7	eggNOG-mapper	665950.HMPREF1025_02522	Phage tail tape measure protein, TP901 family	NA
UHGV-0089928_7	COG	COG1511	NA	NA
UHGV-0089928_7	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0089928_8	PHROG	phrog_1633	NA	unknown function
UHGV-0089928_8	UniRef90	UniRef90_UPI0006C2F0F2	NA	NA
UHGV-0089928_8	eggNOG-mapper	665950.HMPREF1025_02523	NA	NA
UHGV-0089928_8	Pfam	PF17318	NA	DUF5361
UHGV-0089928_8	Structural annotation	PF17318	NA	NA
UHGV-0089928_9	PHROG	phrog_1526	NA	unknown function
UHGV-0089928_9	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0089928_10	PHROG	phrog_117	major tail protein	tail
UHGV-0089928_10	UniRef90	UniRef90_UPI001F18A06D	phage tail protein	NA
UHGV-0089928_10	eggNOG-mapper	665950.HMPREF1025_02525	domain, Protein	NA
UHGV-0089928_10	COG	COG5492	NA	NA
UHGV-0089928_10	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0089928_11	PHROG	phrog_123	tail terminator	connector
UHGV-0089928_11	eggNOG-mapper	665950.HMPREF1025_02526	NA	NA
UHGV-0089928_11	Structural annotation	PF06141	NA	NA
UHGV-0089928_12	PHROG	phrog_387	neck protein	connector
UHGV-0089928_12	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0089928_13	PHROG	phrog_501	head closure Hc1	connector
UHGV-0089928_13	eggNOG-mapper	665950.HMPREF1025_02528	NA	NA
UHGV-0089928_13	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0089928_14	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0089928_14	UniRef90	UniRef90_A0A1C5Y9F2	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0089928_14	eggNOG-mapper	665950.HMPREF1025_02529	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0089928_14	Pfam	PF09355	NA	Phage_Gp19
UHGV-0089928_14	Structural annotation	PF09355	NA	NA
UHGV-0089928_15	PHROG	phrog_32396	NA	unknown function
UHGV-0089928_15	UniRef90	UniRef90_A0A1C5MLP2	Phage capsid family	NA
UHGV-0089928_15	eggNOG-mapper	665950.HMPREF1025_02530	Phage capsid family	NA
UHGV-0089928_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0089928_16	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0089928_16	UniRef90	UniRef90_UPI001961E2FD	NA	NA
UHGV-0089928_16	eggNOG-mapper	665950.HMPREF1025_02531	NA	NA
UHGV-0089928_16	Structural annotation	PF14265	NA	NA
UHGV-0089928_17	PHROG	phrog_17688	NA	unknown function
UHGV-0089928_17	UniRef90	UniRef90_A0A1C5Y909	Phage terminase-like protein, large subunit	NA
UHGV-0089928_17	eggNOG-mapper	665950.HMPREF1025_02532	phage terminase, large subunit	NA
UHGV-0089928_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0089928_17	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0089928_18	PHROG	phrog_3675	NA	unknown function
UHGV-0089928_18	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-0089928_18	eggNOG-mapper	665950.HMPREF1025_02533	YjcQ protein	NA
UHGV-0089928_18	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0089928_18	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0089928_20	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0089928_20	UniRef90	UniRef90_S2ZHD8	Ntox50 domain-containing protein	NA
UHGV-0089928_20	eggNOG-mapper	665950.HMPREF1025_02536	NA	NA
UHGV-0089928_21	PHROG	phrog_104	portal protein	head and packaging
UHGV-0089928_21	UniRef90	UniRef90_A0A1C5Y923	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0089928_21	eggNOG-mapper	665950.HMPREF1025_02537	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0089928_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0089928_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0089928_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0089928_23	UniRef90	UniRef90_A0A564VXK1	Sigma70_r4 domain-containing protein	NA
UHGV-0089928_23	eggNOG-mapper	665950.HMPREF1025_02539	sigma factor activity	NA
UHGV-0089928_23	Pfam	PF07374	NA	DUF1492
UHGV-0089928_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0089928_23	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0089928_24	PHROG	phrog_30671	NA	unknown function
UHGV-0089928_24	UniRef90	UniRef90_A0A6I3QIW7	DNA-binding response regulator	NA
UHGV-0089928_25	PHROG	phrog_25555	NA	unknown function
UHGV-0089928_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0089928_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0089928_26	UniRef90	UniRef90_A5KP92	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0089928_26	eggNOG-mapper	411460.RUMTOR_02076	C-5 cytosine-specific DNA methylase	NA
UHGV-0089928_26	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0089928_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0089928_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0089928_26	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0089928_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0089928_27	PHROG	phrog_5999	DNA methyltransferase	other
UHGV-0089928_27	UniRef90	UniRef90_A5KP91	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0089928_27	eggNOG-mapper	411460.RUMTOR_02075	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0089928_27	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0089928_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0089928_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0089928_28	PHROG	phrog_25488	NA	unknown function
UHGV-0089928_28	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0089928_30	PHROG	phrog_3253	NA	unknown function
UHGV-0089928_30	eggNOG-mapper	411460.RUMTOR_02072	NA	NA
UHGV-0089928_31	PHROG	phrog_23374	NA	unknown function
UHGV-0089928_31	eggNOG-mapper	1256908.HMPREF0373_00664	NA	NA
UHGV-0089928_33	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0089928_33	UniRef90	UniRef90_A0A373SU28	NA	NA
UHGV-0089928_33	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0089928_33	Pfam	PF06048	NA	DUF927
UHGV-0089928_33	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0089928_33	COG	COG5519	NA	NA
UHGV-0089928_33	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0089928_34	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0089928_34	PHROG	phrog_11992	NA	unknown function
UHGV-0089928_34	UniRef90	UniRef90_A5KP85	CHC2 zinc finger domain protein	NA
UHGV-0089928_34	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0089928_34	PADLOC	drt-UG29	DRT	DRT
UHGV-0089928_34	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0089928_34	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0089928_34	Structural annotation	PF01807	NA	NA
UHGV-0089928_35	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0089928_35	UniRef90	UniRef90_A5KP84	ERCC4 domain-containing protein	NA
UHGV-0089928_35	eggNOG-mapper	411460.RUMTOR_02068	NA	NA
UHGV-0089928_35	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0089928_35	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0089928_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0089928_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0089928_36	UniRef90	UniRef90_A5KP83	Single-stranded DNA-binding protein	NA
UHGV-0089928_36	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-0089928_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0089928_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0089928_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0089928_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0089928_36	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0089928_37	PHROG	phrog_21649	NA	unknown function
UHGV-0089928_37	UniRef90	UniRef90_UPI001D0DD6FE	ERF family protein	NA
UHGV-0089928_37	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-0089928_37	Pfam	PF04404	ERF superfamily	ERF
UHGV-0089928_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0089928_37	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0089928_38	PHROG	phrog_674	NA	unknown function
UHGV-0089928_38	UniRef90	UniRef90_A0A373SW80	NA	NA
UHGV-0089928_38	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0089928_38	Pfam	PF07083	NA	DUF1351
UHGV-0089928_38	Structural annotation	PF07083	NA	NA
UHGV-0089928_39	PHROG	phrog_3777	NA	unknown function
UHGV-0089928_39	UniRef90	UniRef90_A0A6L8RVX0	NA	NA
UHGV-0089928_39	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0089928_39	Pfam	PF12957	NA	DUF3846
UHGV-0089928_39	Structural annotation	PF12957	NA	NA
UHGV-0089928_40	PHROG	phrog_34638	NA	unknown function
UHGV-0089928_40	Structural annotation	COG1965	NA	NA
UHGV-0089928_41	PHROG	phrog_22934	NA	unknown function
UHGV-0089928_43	PHROG	phrog_4298	NA	unknown function
UHGV-0089928_43	UniRef90	UniRef90_Q4ZDZ2	ORF076	NA
UHGV-0089928_43	eggNOG-mapper	694427.Palpr_0875	NA	NA
UHGV-0089928_47	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0089928_47	UniRef90	UniRef90_F3AXV7	HTH cro/C1-type domain-containing protein	NA
UHGV-0089928_47	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0089928_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0089928_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0089928_47	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0089928_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0089928_48	UniRef90	UniRef90_F3AXV8	HTH cro/C1-type domain-containing protein	NA
UHGV-0089928_48	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0089928_48	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0089928_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0089928_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0089928_49	PHROG	phrog_20886	NA	unknown function
UHGV-0089928_49	eggNOG-mapper	665950.HMPREF1025_02563	NA	NA
UHGV-0089928_49	Structural annotation	PF06114	NA	NA
UHGV-0089928_50	UniRef90	UniRef90_UPI000F54A0BC	lipoprotein	NA
UHGV-0089928_50	eggNOG-mapper	208439.AJAP_42555	NA	NA
UHGV-0089928_51	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0089928_51	PHROG	phrog_95	integrase	integration and excision
UHGV-0089928_51	UniRef90	UniRef90_A5KP69	Resolvase, N-terminal domain protein	NA
UHGV-0089928_51	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0089928_51	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0089928_51	Pfam	PF07508	Recombinase	Recombinase
UHGV-0089928_51	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0089928_51	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0089928_51	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA