UHGV-0090006

Genome information

Genome length 21,387 bps

CDS count 33

Completeness 84.54% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090006
vOTU ID	vOTU-025364
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_198428
BioSample	SAMEA3449291
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.68
Jumbo phage	No

Genome content
Genome length	21,387 bps
GC content	53.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	90.69%
Average CDS length	591.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090006_1	KOfam	K09167	NA	NA
UHGV-0090006_1	UniRef90	UniRef90_A0A645FDE2	bPH_2 domain-containing protein	NA
UHGV-0090006_1	Pfam	PF03703	Bacterial PH domain	bPH_2
UHGV-0090006_1	COG	COG3402	NA	NA
UHGV-0090006_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0090006_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0090006_2	UniRef90	UniRef90_A0A174SZ32	Resolvase, N terminal domain	NA
UHGV-0090006_2	eggNOG-mapper	445972.ANACOL_03320	NA	NA
UHGV-0090006_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0090006_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0090006_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0090006_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0090006_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0090006_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0090006_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0090006_5	UniRef90	UniRef90_A0A4S2A7J1	Helix-turn-helix domain-containing protein	NA
UHGV-0090006_5	eggNOG-mapper	556261.HMPREF0240_03318	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0090006_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0090006_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090006_6	UniRef90	UniRef90_UPI001C3ED965	helix-turn-helix domain-containing protein	NA
UHGV-0090006_6	eggNOG-mapper	397291.C804_01600	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0090006_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0090006_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0090006_7	PHROG	phrog_7940	NA	unknown function
UHGV-0090006_7	UniRef90	UniRef90_A0A845RCP8	Toxin Bro	NA
UHGV-0090006_7	eggNOG-mapper	526218.Sterm_1322	BRO family, N-terminal domain	NA
UHGV-0090006_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0090006_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0090006_7	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0090006_8	PHROG	phrog_806	NA	unknown function
UHGV-0090006_8	UniRef90	UniRef90_A0A3A9DCP2	NA	NA
UHGV-0090006_8	eggNOG-mapper	1536775.H70737_16835	NA	NA
UHGV-0090006_8	Pfam	PF11611	NA	DUF4352
UHGV-0090006_8	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0090006_14	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0090006_14	UniRef90	UniRef90_UPI0004657152	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0090006_14	eggNOG-mapper	1291050.JAGE01000002_gene3381	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0090006_14	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0090006_14	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0090006_14	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0090006_15	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0090006_15	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0090006_15	UniRef90	UniRef90_A0A1M5ZKP8	DNA replication protein DnaC	NA
UHGV-0090006_15	eggNOG-mapper	926561.KB900624_gene2582	IstB-like ATP binding protein	NA
UHGV-0090006_15	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0090006_15	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0090006_15	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0090006_15	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0090006_17	PHROG	phrog_11237	NA	unknown function
UHGV-0090006_17	eggNOG-mapper	537013.CLOSTMETH_01096	NA	NA
UHGV-0090006_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0090006_18	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0090006_18	UniRef90	UniRef90_A0A417HVX5	Terminase small subunit	NA
UHGV-0090006_18	eggNOG-mapper	315749.Bcer98_2948	Terminase small subunit	NA
UHGV-0090006_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0090006_18	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0090006_18	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0090006_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0090006_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0090006_19	UniRef90	UniRef90_A0A7V8A6P5	Phage terminase large subunit PBSX family	NA
UHGV-0090006_19	eggNOG-mapper	883081.HMPREF9698_01604	Terminase RNAseH like domain	NA
UHGV-0090006_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0090006_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0090006_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0090006_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0090006_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0090006_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0090006_20	UniRef90	UniRef90_A0A843HXP9	Phage portal protein	NA
UHGV-0090006_20	eggNOG-mapper	1123250.KB908417_gene647	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0090006_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0090006_20	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0090006_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0090006_21	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0090006_21	UniRef90	UniRef90_UPI0013869884	minor capsid protein	NA
UHGV-0090006_21	eggNOG-mapper	1226322.HMPREF1545_04053	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0090006_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0090006_21	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0090006_21	COG	COG2369	NA	NA
UHGV-0090006_23	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0090006_23	UniRef90	UniRef90_UPI00131C4E9A	NA	NA
UHGV-0090006_23	eggNOG-mapper	642492.Clole_0971	NA	NA
UHGV-0090006_23	Pfam	PF14265	NA	DUF4355
UHGV-0090006_23	Structural annotation	PF14265	NA	NA
UHGV-0090006_24	PHROG	phrog_544	major head protein	head and packaging
UHGV-0090006_24	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-0090006_24	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0090006_24	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0090006_25	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0090006_25	UniRef90	UniRef90_UPI000D717081	phage head-tail connector protein	NA
UHGV-0090006_25	eggNOG-mapper	1540257.JQMW01000009_gene3373	Phage gp6-like head-tail connector protein	NA
UHGV-0090006_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0090006_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0090006_26	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0090006_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0090006_27	UniRef90	UniRef90_UPI0015C5E40B	HK97 gp10 family phage protein	NA
UHGV-0090006_27	eggNOG-mapper	1280689.AUJC01000007_gene3313	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0090006_27	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0090006_27	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0090006_27	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0090006_28	Structural annotation	PF09646, COG3167	NA	NA
UHGV-0090006_29	PHROG	phrog_158	major tail protein	tail
UHGV-0090006_29	UniRef90	UniRef90_UPI0005906553	tail protein	NA
UHGV-0090006_29	eggNOG-mapper	1499683.CCFF01000017_gene2926	Phage tail tube protein, TTP	NA
UHGV-0090006_29	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0090006_29	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0090006_30	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0090006_30	UniRef90	UniRef90_UPI0005AA54D3	NA	NA
UHGV-0090006_30	eggNOG-mapper	1499683.CCFF01000017_gene2925	NA	NA
UHGV-0090006_30	Pfam	PF19591	NA	DUF6096
UHGV-0090006_30	Structural annotation	PF19591, TIGR01674	NA	NA
UHGV-0090006_31	PHROG	phrog_2066	NA	unknown function
UHGV-0090006_31	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-0090006_32	PHROG	phrog_31409	tail length tape measure protein	tail
UHGV-0090006_32	UniRef90	UniRef90_A0A7Z7G584	Phage-related protein	NA
UHGV-0090006_32	eggNOG-mapper	1280689.AUJC01000003_gene976	phage tail tape measure protein	NA
UHGV-0090006_32	COG	COG5283	Phage-related tail protein	NA
UHGV-0090006_32	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0090006_33	PHROG	phrog_1194	NA	unknown function
UHGV-0090006_33	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA