UHGV-0090030

Genome information

Genome length 41,419 bps

CDS count 47

Completeness 96.15% (high-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090030
vOTU ID	vOTU-074812
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_198469
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.15% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.28
Jumbo phage	No

Genome content
Genome length	41,419 bps
GC content	37.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	89.08%
Average CDS length	786.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090030_1	KOfam	K14059	int; integrase	NA
UHGV-0090030_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0090030_1	UniRef90	UniRef90_A0A415UCT2	Integrase	NA
UHGV-0090030_1	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0090030_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0090030_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0090030_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0090030_2	PHROG	phrog_13260	NA	unknown function
UHGV-0090030_2	UniRef90	UniRef90_A0A6B3KZP6	FunZ	NA
UHGV-0090030_2	eggNOG-mapper	411469.EUBHAL_02004	NA	NA
UHGV-0090030_3	PHROG	phrog_13260	NA	unknown function
UHGV-0090030_3	eggNOG-mapper	411469.EUBHAL_02004	NA	NA
UHGV-0090030_4	Structural annotation	PF12869, PF01336, NF012035, COG4085	NA	NA
UHGV-0090030_5	UniRef90	UniRef90_UPI00129D7E5C	EbhA	NA
UHGV-0090030_5	eggNOG-mapper	1121865.OMW_00786	NA	NA
UHGV-0090030_5	Structural annotation	PF20650	NA	NA
UHGV-0090030_6	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0090030_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0090030_6	UniRef90	UniRef90_UPI001ADD6636	helix-turn-helix transcriptional regulator	NA
UHGV-0090030_6	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-0090030_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090030_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0090030_7	UniRef90	UniRef90_UPI001ADD68C4	XRE family transcriptional regulator	NA
UHGV-0090030_7	eggNOG-mapper	1321814.HMPREF9089_00909	Helix-turn-helix domain of resolvase	NA
UHGV-0090030_7	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0090030_8	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0090030_9	UniRef90	UniRef90_UPI001D0976C2	actin family protein	NA
UHGV-0090030_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0090030_10	UniRef90	UniRef90_A0A415UCP1	XRE family transcriptional regulator	NA
UHGV-0090030_10	eggNOG-mapper	1449343.JQLQ01000002_gene686	NA	NA
UHGV-0090030_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090030_10	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0090030_11	Structural annotation	PF10922	NA	NA
UHGV-0090030_12	PHROG	phrog_3777	NA	unknown function
UHGV-0090030_12	UniRef90	UniRef90_UPI001ADD9B3A	NA	NA
UHGV-0090030_12	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0090030_12	Structural annotation	PF12957	NA	NA
UHGV-0090030_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0090030_13	UniRef90	UniRef90_A0A415UCZ1	Endonuclease	NA
UHGV-0090030_13	eggNOG-mapper	1235799.C818_02268	YqaJ-like viral recombinase domain	NA
UHGV-0090030_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0090030_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0090030_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0090030_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0090030_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0090030_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0090030_14	UniRef90	UniRef90_A0A415UCR6	Recombinase RecT	NA
UHGV-0090030_14	eggNOG-mapper	658088.HMPREF0987_00529	RecT family	NA
UHGV-0090030_14	Pfam	PF03837	RecT family	RecT
UHGV-0090030_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0090030_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0090030_14	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0090030_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0090030_15	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0090030_15	UniRef90	UniRef90_A0A415UCR1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0090030_15	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0090030_15	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0090030_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0090030_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0090030_16	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0090030_16	UniRef90	UniRef90_A0A415UCS3	NA	NA
UHGV-0090030_16	eggNOG-mapper	537013.CLOSTMETH_01717	NA	NA
UHGV-0090030_16	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0090030_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0090030_16	Structural annotation	PF14297	NA	NA
UHGV-0090030_17	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0090030_17	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0090030_17	UniRef90	UniRef90_A0A174S919	Phage anti-repressor protein	NA
UHGV-0090030_17	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0090030_17	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0090030_17	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0090030_17	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0090030_18	PHROG	phrog_6568	NA	unknown function
UHGV-0090030_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0090030_19	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0090030_19	eggNOG-mapper	411902.CLOBOL_00148	NA	NA
UHGV-0090030_19	Structural annotation	PF02996	NA	NA
UHGV-0090030_20	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0090030_20	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0090030_20	UniRef90	UniRef90_A0A174CI14	Sporulation initiation inhibitor protein soj	NA
UHGV-0090030_20	eggNOG-mapper	1235792.C808_05327	Anion-transporting ATPase	NA
UHGV-0090030_20	Pfam	PF13614	AAA domain	AAA_31
UHGV-0090030_20	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0090030_20	Structural annotation	PF01656, MF_00355, NF041283, COG1192	NA	NA
UHGV-0090030_21	PHROG	phrog_6264	NA	unknown function
UHGV-0090030_21	eggNOG-mapper	1235792.C808_05328	NA	NA
UHGV-0090030_22	PHROG	phrog_7540	NA	unknown function
UHGV-0090030_22	eggNOG-mapper	1235792.C808_05329	NA	NA
UHGV-0090030_23	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0090030_23	UniRef90	UniRef90_A0A415UCQ6	Terminase	NA
UHGV-0090030_23	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-0090030_23	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0090030_23	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0090030_23	COG	COG5484	NA	NA
UHGV-0090030_23	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0090030_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0090030_24	PHROG	phrog_10250	NA	unknown function
UHGV-0090030_24	UniRef90	UniRef90_A0A415UCP7	PBSX family phage terminase large subunit	NA
UHGV-0090030_24	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0090030_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0090030_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0090030_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0090030_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0090030_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0090030_25	UniRef90	UniRef90_A0A415G5I2	Phage capsid protein	NA
UHGV-0090030_25	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0090030_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0090030_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0090030_26	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0090030_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0090030_26	UniRef90	UniRef90_A0A415UCR3	Phage capsid protein	NA
UHGV-0090030_26	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0090030_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0090030_26	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0090030_26	COG	COG2369	NA	NA
UHGV-0090030_26	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-0090030_28	PHROG	phrog_24129	NA	unknown function
UHGV-0090030_28	UniRef90	UniRef90_W6NHA7	Antirepressor [Bacteriophage A118]	NA
UHGV-0090030_28	eggNOG-mapper	1298920.KI911353_gene2074	BRO family, N-terminal domain	NA
UHGV-0090030_28	COG	COG3617	Prophage antirepressor	NA
UHGV-0090030_29	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0090030_29	UniRef90	UniRef90_A0A415G5D8	Bro-N domain-containing protein	NA
UHGV-0090030_29	eggNOG-mapper	1151292.QEW_2476	BRO family, N-terminal domain	NA
UHGV-0090030_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0090030_29	COG	COG3617	Prophage antirepressor	NA
UHGV-0090030_30	PHROG	phrog_872	NA	unknown function
UHGV-0090030_30	eggNOG-mapper	411902.CLOBOL_06322	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0090030_30	dbAPIS	APIS052	NA	NA
UHGV-0090030_31	PHROG	phrog_918	NA	unknown function
UHGV-0090030_31	UniRef90	UniRef90_UPI001D092FF5	NA	NA
UHGV-0090030_31	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0090030_31	Pfam	PF19791	NA	DUF6275
UHGV-0090030_31	Structural annotation	PF19791	NA	NA
UHGV-0090030_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0090030_32	UniRef90	UniRef90_B0MB52	Phage minor structural protein GP20	NA
UHGV-0090030_32	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0090030_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0090030_32	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0090030_33	PHROG	phrog_247	major head protein	head and packaging
UHGV-0090030_33	UniRef90	UniRef90_A0A415UCN2	Phage coat protein	NA
UHGV-0090030_33	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0090030_33	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0090030_33	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0090030_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0090030_34	eggNOG-mapper	411490.ANACAC_00776	NA	NA
UHGV-0090030_35	PHROG	phrog_3366	NA	unknown function
UHGV-0090030_35	eggNOG-mapper	411490.ANACAC_00775	NA	NA
UHGV-0090030_35	Pfam	PF20536	NA	DUF6751
UHGV-0090030_35	Structural annotation	PF20536	NA	NA
UHGV-0090030_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0090030_36	UniRef90	UniRef90_A0A415UCL3	Capsid protein	NA
UHGV-0090030_36	eggNOG-mapper	411490.ANACAC_00774	Minor capsid protein	NA
UHGV-0090030_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0090030_36	Structural annotation	PF11114	NA	NA
UHGV-0090030_37	PHROG	phrog_3266	tail completion	connector
UHGV-0090030_37	UniRef90	UniRef90_A0A415UCP6	Chloramphenicol resistance protein	NA
UHGV-0090030_37	eggNOG-mapper	411490.ANACAC_00773	NA	NA
UHGV-0090030_37	Structural annotation	PF12691	NA	NA
UHGV-0090030_38	PHROG	phrog_3099	NA	unknown function
UHGV-0090030_38	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0090030_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0090030_39	PHROG	phrog_4450	NA	unknown function
UHGV-0090030_39	eggNOG-mapper	411490.ANACAC_00770	NA	NA
UHGV-0090030_39	Structural annotation	PF20378	NA	NA
UHGV-0090030_40	PHROG	phrog_706	NA	unknown function
UHGV-0090030_40	UniRef90	UniRef90_B0MAY5	Bacteriophage Gp15 protein	NA
UHGV-0090030_40	eggNOG-mapper	411490.ANACAC_00711	Bacteriophage Gp15 protein	NA
UHGV-0090030_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0090030_40	Structural annotation	PF06854	NA	NA
UHGV-0090030_41	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0090030_41	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0090030_41	UniRef90	UniRef90_A0A415UCW1	Phage tail tape measure protein	NA
UHGV-0090030_41	eggNOG-mapper	1235799.C818_04231	Phage tail tape measure protein, TP901 family	NA
UHGV-0090030_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0090030_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0090030_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0090030_41	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0090030_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0090030_42	UniRef90	UniRef90_A0A415UCK7	MtfA protein	NA
UHGV-0090030_42	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0090030_42	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0090030_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0090030_42	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0090030_43	PHROG	phrog_3558	tail protein	tail
UHGV-0090030_43	UniRef90	UniRef90_A0A415UCM3	Prophage_tail domain-containing protein	NA
UHGV-0090030_43	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-0090030_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0090030_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0090030_43	COG	COG4926	Phage-related protein	NA
UHGV-0090030_43	Structural annotation	PF06605, PF09931, TIGR01665, COG4926	NA	NA
UHGV-0090030_44	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0090030_45	UniRef90	UniRef90_A0A173S152	RNA_pol_Rpb1_2 domain-containing protein	NA
UHGV-0090030_45	Structural annotation	PF03412	NA	NA
UHGV-0090030_46	PHROG	phrog_199	holin	lysis
UHGV-0090030_46	UniRef90	UniRef90_A0A414B826	Holin	NA
UHGV-0090030_46	eggNOG-mapper	394503.Ccel_2943	toxin secretion phage lysis holin	NA
UHGV-0090030_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0090030_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0090030_46	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0090030_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0090030_47	KOfam	K07273	acm; lysozyme	NA
UHGV-0090030_47	PHROG	phrog_291	endolysin	lysis
UHGV-0090030_47	UniRef90	UniRef90_A0A174K8T9	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0090030_47	eggNOG-mapper	397287.C807_01339	Glycosyl hydrolases family 25	NA
UHGV-0090030_47	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0090030_47	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0090030_47	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA