UHGV-0090169

Genome information

Genome length 41,437 bps

CDS count 67

Completeness 100.00% (complete)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090169
vOTU ID	vOTU-006288
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_183133
BioSample	SAMEA3449225
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.41
Jumbo phage	No

Genome content
Genome length	41,437 bps
GC content	42.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	92.30%
Average CDS length	575.24 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090169_1	PHROG	phrog_14105	NA	unknown function
UHGV-0090169_1	eggNOG-mapper	485918.Cpin_3860	Pentapeptide repeats (8 copies)	NA
UHGV-0090169_1	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0090169_1	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0090169_1	Structural annotation	PF01469	NA	NA
UHGV-0090169_4	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0090169_4	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0090169_4	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-0090169_4	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0090169_4	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0090169_4	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0090169_4	COG	COG0863	DNA modification methylase	NA
UHGV-0090169_4	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0090169_5	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0090169_5	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0090169_5	UniRef90	UniRef90_R6DSN6	Replicative DNA helicase	NA
UHGV-0090169_5	eggNOG-mapper	1123313.ATUT01000003_gene867	IstB-like ATP binding protein	NA
UHGV-0090169_5	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0090169_5	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0090169_5	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0090169_5	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0090169_6	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0090169_6	UniRef90	UniRef90_UPI001C1E0E19	GntR family transcriptional regulator	NA
UHGV-0090169_6	eggNOG-mapper	646529.Desaci_3039	Transcriptional regulator	NA
UHGV-0090169_6	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0090169_6	Structural annotation	PF08222, NF033788, COG0640	NA	NA
UHGV-0090169_7	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0090169_7	UniRef90	UniRef90_R6DSN2	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0090169_7	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0090169_7	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0090169_7	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0090169_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0090169_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0090169_8	UniRef90	UniRef90_R6E0A2	Single-stranded DNA-binding protein	NA
UHGV-0090169_8	eggNOG-mapper	1120998.AUFC01000019_gene325	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0090169_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0090169_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0090169_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0090169_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0090169_8	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0090169_9	PHROG	phrog_7566	NA	unknown function
UHGV-0090169_9	eggNOG-mapper	1118057.CAGX01000020_gene1648	NA	NA
UHGV-0090169_10	PHROG	phrog_1389	NA	unknown function
UHGV-0090169_10	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0090169_10	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0090169_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0090169_11	UniRef90	UniRef90_UPI001CF8591D	YqaJ viral recombinase family protein	NA
UHGV-0090169_11	eggNOG-mapper	1122146.AUHP01000010_gene1042	YqaJ viral recombinase family	NA
UHGV-0090169_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0090169_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0090169_11	Structural annotation	PF10926, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0090169_12	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0090169_12	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0090169_12	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0090169_14	PHROG	phrog_2113	NA	unknown function
UHGV-0090169_14	Pfam	PF08279	HTH domain	HTH_11
UHGV-0090169_15	PHROG	phrog_22529	NA	unknown function
UHGV-0090169_15	UniRef90	UniRef90_R6EKT9	3D domain-containing protein	NA
UHGV-0090169_15	eggNOG-mapper	877420.ATVW01000029_gene1358	3D domain	NA
UHGV-0090169_15	Pfam	PF06725	3D domain	3D
UHGV-0090169_15	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0090169_15	Structural annotation	PF06725, MF_02071, NF040677, COG3584	NA	NA
UHGV-0090169_17	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0090169_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0090169_17	UniRef90	UniRef90_A0A8G0M6K7	Helix-turn-helix domain-containing protein	NA
UHGV-0090169_17	eggNOG-mapper	12417.Q9T1J3_9CAUD	sequence-specific DNA binding	NA
UHGV-0090169_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090169_17	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0090169_18	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0090169_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0090169_19	UniRef90	UniRef90_UPI001915FD06	helix-turn-helix domain-containing protein	NA
UHGV-0090169_19	eggNOG-mapper	1260356.D920_01819	Helix-turn-helix XRE-family like proteins	NA
UHGV-0090169_19	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0090169_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0090169_19	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0090169_20	PHROG	phrog_20936	NA	unknown function
UHGV-0090169_20	UniRef90	UniRef90_UPI00164BB8FD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0090169_20	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0090169_20	Structural annotation	PF06114	NA	NA
UHGV-0090169_21	KOfam	K06882	NA	NA
UHGV-0090169_21	PHROG	phrog_14556	NA	unknown function
UHGV-0090169_21	eggNOG-mapper	1235802.C823_02972	competence protein COMEC	NA
UHGV-0090169_21	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0090169_22	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0090169_22	PHROG	phrog_95	integrase	integration and excision
UHGV-0090169_22	UniRef90	UniRef90_A0A1C6CR25	Recombinase	NA
UHGV-0090169_22	eggNOG-mapper	483218.BACPEC_01184	Resolvase, N terminal domain	NA
UHGV-0090169_22	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0090169_22	Pfam	PF07508	Recombinase	Recombinase
UHGV-0090169_22	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0090169_22	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0090169_22	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0090169_24	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0090169_25	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0090169_27	PHROG	phrog_21718	NA	unknown function
UHGV-0090169_27	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0090169_28	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0090169_28	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0090169_28	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0090169_29	PHROG	phrog_6918	holin	lysis
UHGV-0090169_29	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0090169_29	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0090169_32	UniRef90	UniRef90_A0A7X6X882	CHAP domain-containing protein	NA
UHGV-0090169_32	eggNOG-mapper	552396.HMPREF0863_01358	CHAP domain	NA
UHGV-0090169_32	Pfam	PF05257	CHAP domain	CHAP
UHGV-0090169_32	COG	COG3942	Surface antigen	NA
UHGV-0090169_32	Structural annotation	COG3942	NA	NA
UHGV-0090169_33	PHROG	phrog_9854	NA	unknown function
UHGV-0090169_33	UniRef90	UniRef90_A0A1H2SFG5	LPD38 domain-containing protein	NA
UHGV-0090169_33	eggNOG-mapper	1121091.AUMP01000003_gene2597	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	NA
UHGV-0090169_33	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0090169_33	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0090169_33	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0090169_33	Structural annotation	PF18857, PF18798	NA	NA
UHGV-0090169_34	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0090169_34	Structural annotation	TIGR02559	NA	NA
UHGV-0090169_39	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0090169_39	eggNOG-mapper	1408437.JNJN01000002_gene1390	NA	NA
UHGV-0090169_39	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0090169_41	Structural annotation	PF07100, COG4288	NA	NA
UHGV-0090169_42	PHROG	phrog_267	major head protein	head and packaging
UHGV-0090169_42	UniRef90	UniRef90_A0A7C6CNA9	P22 coat protein-protein 5 domain protein	NA
UHGV-0090169_42	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-0090169_42	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0090169_44	PHROG	phrog_156	portal protein	head and packaging
UHGV-0090169_44	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA
UHGV-0090169_44	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0090169_46	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0090169_46	UniRef90	UniRef90_A0A845QMQ7	Terminase	NA
UHGV-0090169_46	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-0090169_46	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0090169_46	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0090169_46	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0090169_46	COG	COG5362	Phage terminase large subunit	NA
UHGV-0090169_46	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0090169_48	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0090169_48	UniRef90	UniRef90_G9B1F6	Gp55	NA
UHGV-0090169_48	eggNOG-mapper	764595.G9B1F6_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0090169_49	UniRef90	UniRef90_A0A316R7E8	RHH_1 domain-containing protein	NA
UHGV-0090169_49	Structural annotation	PF10723, NF040976, COG4710	NA	NA
UHGV-0090169_50	PHROG	phrog_15863	NA	unknown function
UHGV-0090169_50	UniRef90	UniRef90_A0A644WI33	J domain-containing protein	NA
UHGV-0090169_50	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0090169_50	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0090169_53	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0090169_54	Structural annotation	PF18066	NA	NA
UHGV-0090169_56	PHROG	phrog_25385	NA	unknown function
UHGV-0090169_56	eggNOG-mapper	718252.FP2_16450	NA	NA
UHGV-0090169_57	PHROG	phrog_1485	NA	unknown function
UHGV-0090169_57	UniRef90	UniRef90_A0A3S8RPB6	NA	NA
UHGV-0090169_57	eggNOG-mapper	1444310.JANV01000096_gene3245	NA	NA
UHGV-0090169_57	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0090169_57	Structural annotation	PF07659	NA	NA
UHGV-0090169_58	PHROG	phrog_10714	NA	unknown function
UHGV-0090169_58	UniRef90	UniRef90_R5R2P7	DNA polymerase II large subunit	NA
UHGV-0090169_58	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0090169_60	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0090169_60	UniRef90	UniRef90_G4KQ95	HNHc domain-containing protein	NA
UHGV-0090169_60	eggNOG-mapper	693746.OBV_25310	HNH endonuclease	NA
UHGV-0090169_60	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0090169_60	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0090169_60	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0090169_63	PHROG	phrog_21026	NA	unknown function
UHGV-0090169_65	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-0090169_67	PHROG	phrog_14105	NA	unknown function
UHGV-0090169_67	UniRef90	UniRef90_UPI001E51E034	pentapeptide repeat-containing protein	NA
UHGV-0090169_67	eggNOG-mapper	97138.C820_00368	PPE family	NA
UHGV-0090169_67	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0090169_67	COG	COG5651	PPE-repeat protein	NA
UHGV-0090169_67	Structural annotation	PF01469	NA	NA