UHGV-0090202

Genome information

Genome length 36,285 bps

CDS count 47

Completeness 99.90% (high-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090202
vOTU ID	vOTU-014619
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_195399
BioSample	SAMEA3449304
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.51
Jumbo phage	No

Genome content
Genome length	36,285 bps
GC content	61.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.33%
Average CDS length	722.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090202_3	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0090202_3	UniRef90	UniRef90_A0A358PK49	Transcriptional regulator	NA
UHGV-0090202_3	eggNOG-mapper	246194.CHY_1694	Helix-turn-helix XRE-family like proteins	NA
UHGV-0090202_3	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0090202_3	Structural annotation	PF06892, NF040522, COG1476	NA	NA
UHGV-0090202_5	UniRef90	UniRef90_A0A1Q6JK14	HTH_17 domain-containing protein	NA
UHGV-0090202_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0090202_5	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0090202_6	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0090202_6	UniRef90	UniRef90_A0A5D3I7V8	DNA primase	NA
UHGV-0090202_6	eggNOG-mapper	760568.Desku_3516	DNA primase	NA
UHGV-0090202_6	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0090202_6	Structural annotation	PF06048, PF01807, PF18662, PF19898, MF_00974, MF_00016, TIGR01391, NF011296, COG5519, COG0358	NA	NA
UHGV-0090202_8	PHROG	phrog_15609	NA	unknown function
UHGV-0090202_8	UniRef90	UniRef90_A0A3D2H4F9	HTH_ParB domain-containing protein	NA
UHGV-0090202_8	eggNOG-mapper	1232428.CAVO010000003_gene1018	NA	NA
UHGV-0090202_8	Pfam	PF11300	NA	DUF3102
UHGV-0090202_8	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0090202_8	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0090202_10	Structural annotation	PF18892	NA	NA
UHGV-0090202_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0090202_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0090202_11	UniRef90	UniRef90_A0A1Q6JK17	Single-stranded DNA-binding protein	NA
UHGV-0090202_11	eggNOG-mapper	1321784.HMPREF1987_01307	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0090202_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0090202_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0090202_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0090202_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0090202_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0090202_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0090202_12	UniRef90	UniRef90_A0A1Q6JK08	Sigma70_r4 domain-containing protein	NA
UHGV-0090202_13	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0090202_13	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0090202_13	UniRef90	UniRef90_A0A1Q6JKE6	HNH domain-containing protein	NA
UHGV-0090202_13	eggNOG-mapper	1295642.H839_15988	HNH nucleases	NA
UHGV-0090202_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0090202_13	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0090202_14	UniRef90	UniRef90_UPI0007B3AFE4	P27 family phage terminase small subunit	NA
UHGV-0090202_14	eggNOG-mapper	1295642.H839_15978	Phage terminase, small subunit	NA
UHGV-0090202_14	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0090202_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0090202_15	UniRef90	UniRef90_A0A2V2G2T2	Terminase large subunit	NA
UHGV-0090202_15	eggNOG-mapper	1295642.H839_15973	Phage Terminase	NA
UHGV-0090202_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0090202_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0090202_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0090202_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0090202_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0090202_16	UniRef90	UniRef90_A0A1Q6JK00	Phage portal protein	NA
UHGV-0090202_16	eggNOG-mapper	235909.GK0529	Phage portal protein	NA
UHGV-0090202_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0090202_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0090202_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0090202_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0090202_17	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0090202_17	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0090202_17	UniRef90	UniRef90_A0A2V2G0Z1	Peptidase	NA
UHGV-0090202_17	eggNOG-mapper	203119.Cthe_1720	Belongs to the peptidase S14 family	NA
UHGV-0090202_17	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0090202_17	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0090202_17	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0090202_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0090202_18	UniRef90	UniRef90_A0A2V2FYC2	Phage major capsid protein	NA
UHGV-0090202_18	eggNOG-mapper	1007103.AFHW01000142_gene1299	Phage capsid family	NA
UHGV-0090202_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0090202_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0090202_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0090202_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0090202_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0090202_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0090202_21	UniRef90	UniRef90_A0A1T4XJK8	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0090202_21	eggNOG-mapper	767817.Desgi_4501	PFAM Phage head-tail joining protein	NA
UHGV-0090202_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0090202_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0090202_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0090202_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0090202_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0090202_22	eggNOG-mapper	1235792.C808_03060	NA	NA
UHGV-0090202_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0090202_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0090202_22	Structural annotation	TIGR01725	NA	NA
UHGV-0090202_23	PHROG	phrog_78	tail terminator	connector
UHGV-0090202_23	Structural annotation	PF05657	NA	NA
UHGV-0090202_24	PHROG	phrog_88	major tail protein	tail
UHGV-0090202_24	UniRef90	UniRef90_A0A1E5JX14	Phage tail protein	NA
UHGV-0090202_24	eggNOG-mapper	1238184.CM001792_gene2511	Phage tail tube protein	NA
UHGV-0090202_24	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0090202_24	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0090202_24	COG	COG5492	NA	NA
UHGV-0090202_24	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0090202_26	KOfam	K19157	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	NA
UHGV-0090202_26	PHROG	phrog_7251	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0090202_26	UniRef90	UniRef90_UPI000F8F5A13	type II toxin-antitoxin system YafQ family toxin	NA
UHGV-0090202_26	eggNOG-mapper	596328.HMPREF0578_0519	endonuclease activity	NA
UHGV-0090202_26	Pfam	PF15738	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
UHGV-0090202_26	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0090202_26	COG	COG3041	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	NA
UHGV-0090202_26	Structural annotation	PF15738, TIGR00053, COG3041	NA	NA
UHGV-0090202_27	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0090202_27	PHROG	phrog_2737	NA	unknown function
UHGV-0090202_27	UniRef90	UniRef90_A0A3D4X8F7	Type II toxin-antitoxin system antitoxin, RelB/DinJ family	NA
UHGV-0090202_27	eggNOG-mapper	888060.HMPREF9081_1784	Addiction module antitoxin, RelB DinJ family	NA
UHGV-0090202_27	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0090202_27	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0090202_27	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0090202_27	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-0090202_28	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0090202_28	UniRef90	UniRef90_A0A2V2G1E2	PhageMin_Tail domain-containing protein	NA
UHGV-0090202_28	eggNOG-mapper	665950.HMPREF1025_02680	Phage-related minor tail protein	NA
UHGV-0090202_28	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0090202_28	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0090202_29	UniRef90	UniRef90_A0A1C5WHV3	RHH_3 domain-containing protein	NA
UHGV-0090202_29	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-0090202_29	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-0090202_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0090202_31	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0090202_31	COG	COG4722	Phage-related protein YomH	NA
UHGV-0090202_31	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0090202_33	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-0090202_33	UniRef90	UniRef90_A0A2V2FYD1	Prophage_tail domain-containing protein	NA
UHGV-0090202_33	eggNOG-mapper	1536769.P40081_01145	Prophage endopeptidase tail	NA
UHGV-0090202_33	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0090202_33	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0090202_33	COG	COG4926	Phage-related protein	NA
UHGV-0090202_33	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0090202_35	PHROG	phrog_19280	NA	unknown function
UHGV-0090202_35	UniRef90	UniRef90_A0A1Q6JJX5	NA	NA
UHGV-0090202_35	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0090202_35	Pfam	PF19789	NA	DUF6273
UHGV-0090202_35	Structural annotation	PF19789	NA	NA
UHGV-0090202_37	Pfam	PF19789	NA	DUF6273
UHGV-0090202_38	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0090202_38	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0090202_38	UniRef90	UniRef90_A0A143XZK4	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0090202_38	eggNOG-mapper	665950.HMPREF1025_01556	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0090202_38	PADLOC	drt-UG4	DRT	DRT
UHGV-0090202_38	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0090202_39	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0090202_39	UniRef90	UniRef90_UPI0011DCDC2D	phage tail assembly chaperone	NA
UHGV-0090202_39	eggNOG-mapper	269482.Bcep1808_1285	Phage tail assembly chaperone protein	NA
UHGV-0090202_39	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0090202_39	Structural annotation	PF16778	NA	NA
UHGV-0090202_41	KOfam	K20742	ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]	NA
UHGV-0090202_41	PHROG	phrog_2649	endolysin	lysis
UHGV-0090202_41	UniRef90	UniRef90_A0A1Q6PTR5	PG_binding_1 domain-containing protein	NA
UHGV-0090202_41	eggNOG-mapper	357809.Cphy_2849	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0090202_41	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0090202_41	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0090202_41	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0090202_41	Structural annotation	PF18342, PF01471, PF00877, NF038080, COG4991, COG3409, COG0791	NA	NA
UHGV-0090202_42	PHROG	phrog_937	hemolysin	other
UHGV-0090202_43	PHROG	phrog_6918	holin	lysis
UHGV-0090202_43	UniRef90	UniRef90_A0A1C6IFT5	Phage holin, LL-H family	NA
UHGV-0090202_43	eggNOG-mapper	1203606.HMPREF1526_01929	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0090202_43	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0090202_43	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0090202_45	KOfam	K14059	int; integrase	NA
UHGV-0090202_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0090202_45	UniRef90	UniRef90_R7IEV7	Site-specific recombinase XerD	NA
UHGV-0090202_45	eggNOG-mapper	760568.Desku_1398	Belongs to the 'phage' integrase family	NA
UHGV-0090202_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0090202_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0090202_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0090202_45	Structural annotation	PF00589, PF14659, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0090202_47	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0090202_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0090202_47	eggNOG-mapper	411468.CLOSCI_00009	Helix-turn-helix XRE-family like proteins	NA
UHGV-0090202_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090202_47	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA