UHGV-0090206

Genome information

Genome length 33,871 bps

CDS count 46

Completeness 99.49% (high-quality)

geNomad score 0.9534

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090206
vOTU ID	vOTU-014614
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_186926
BioSample	SAMEA3449235
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9534
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.89
Jumbo phage	No

Genome content
Genome length	33,871 bps
GC content	50.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.91%
Average CDS length	687.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090206_2	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0090206_2	UniRef90	UniRef90_UPI0016270003	ERF family protein	NA
UHGV-0090206_2	eggNOG-mapper	1327970.R9ZVT8_9CAUD	ERF superfamily	NA
UHGV-0090206_2	Pfam	PF04404	ERF superfamily	ERF
UHGV-0090206_2	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0090206_3	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0090206_3	UniRef90	UniRef90_A0A6J5QVI4	Siphovirus Gp157	NA
UHGV-0090206_3	eggNOG-mapper	85154.O34039_BPO12	Siphovirus Gp157	NA
UHGV-0090206_3	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0090206_3	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0090206_4	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0090206_4	UniRef90	UniRef90_A0A3E4WFL2	NA	NA
UHGV-0090206_4	eggNOG-mapper	762968.HMPREF9441_02241	NA	NA
UHGV-0090206_4	Pfam	PF11325	NA	DUF3127
UHGV-0090206_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0090206_4	Structural annotation	PF11325, MF_00720, NF005241, COG2965	NA	NA
UHGV-0090206_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0090206_5	eggNOG-mapper	1127696.HMPREF9134_00465	NA	NA
UHGV-0090206_5	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0090206_6	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0090206_6	eggNOG-mapper	1235788.C802_00065	NA	NA
UHGV-0090206_6	Structural annotation	PF02075, MF_00034, NF000711, COG2410	NA	NA
UHGV-0090206_7	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0090206_7	eggNOG-mapper	1123058.KB894259_gene376	NA	NA
UHGV-0090206_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0090206_7	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0090206_8	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0090206_8	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0090206_8	UniRef90	UniRef90_A0A845PBA0	ATP-binding protein	NA
UHGV-0090206_8	eggNOG-mapper	357276.EL88_12635	IstB-like ATP binding protein	NA
UHGV-0090206_8	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0090206_8	Structural annotation	PF00308, MF_03025, NF005992, COG1484	NA	NA
UHGV-0090206_9	Structural annotation	PF13835, NF000243	NA	NA
UHGV-0090206_10	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0090206_10	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0090206_10	UniRef90	UniRef90_A0A1Q6F298	Cytosine-specific methyltransferase	NA
UHGV-0090206_10	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0090206_10	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0090206_10	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0090206_10	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0090206_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0090206_10	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0090206_12	eggNOG-mapper	445970.ALIPUT_01619	NA	NA
UHGV-0090206_13	PHROG	phrog_874	NA	unknown function
UHGV-0090206_13	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0090206_13	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0090206_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0090206_18	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0090206_18	UniRef90	UniRef90_A0A316NYX6	Terminase small subunit	NA
UHGV-0090206_18	eggNOG-mapper	742725.HMPREF9450_02101	COG NOG24226 non supervised orthologous group	NA
UHGV-0090206_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0090206_18	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0090206_18	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0090206_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0090206_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0090206_19	UniRef90	UniRef90_UPI000B385012	phage terminase large subunit	NA
UHGV-0090206_19	eggNOG-mapper	1123276.KB893279_gene2250	Phage terminase, large subunit, PBSX family	NA
UHGV-0090206_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0090206_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0090206_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0090206_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0090206_20	UniRef90	UniRef90_UPI00111ECBEF	phage portal protein	NA
UHGV-0090206_20	eggNOG-mapper	449673.BACSTE_00582	Phage portal protein	NA
UHGV-0090206_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0090206_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0090206_21	UniRef90	UniRef90_A0A8E5EAY2	Structural protein	NA
UHGV-0090206_21	eggNOG-mapper	1300143.CCAV010000006_gene4313	NA	NA
UHGV-0090206_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0090206_22	UniRef90	UniRef90_UPI000B391E6C	phage major capsid protein	NA
UHGV-0090206_22	eggNOG-mapper	1327970.R9ZZJ5_9CAUD	peptidase activity	NA
UHGV-0090206_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0090206_22	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0090206_24	eggNOG-mapper	449673.BACSTE_00578	NA	NA
UHGV-0090206_24	Structural annotation	PF20459	NA	NA
UHGV-0090206_25	eggNOG-mapper	449673.BACSTE_00577	NA	NA
UHGV-0090206_26	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0090206_28	PHROG	phrog_6195	tail protein	tail
UHGV-0090206_28	eggNOG-mapper	1347393.HG726021_gene380	NA	NA
UHGV-0090206_30	PHROG	phrog_14295	NA	unknown function
UHGV-0090206_30	eggNOG-mapper	1122971.BAME01000119_gene6173	Phage-related minor tail protein	NA
UHGV-0090206_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0090206_31	PHROG	phrog_22157	NA	unknown function
UHGV-0090206_31	eggNOG-mapper	742725.HMPREF9450_00889	NA	NA
UHGV-0090206_32	eggNOG-mapper	742725.HMPREF9450_00892	NA	NA
UHGV-0090206_33	Structural annotation	PF13385, PF00629, MF_00825, TIGR04362, COG4766	NA	NA
UHGV-0090206_35	PHROG	phrog_20732	NA	unknown function
UHGV-0090206_35	UniRef90	UniRef90_UPI0009352414	phage holin family protein	NA
UHGV-0090206_35	eggNOG-mapper	484018.BACPLE_02426	Bacteriophage holin family	NA
UHGV-0090206_35	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0090206_35	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0090206_36	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0090206_36	PHROG	phrog_894	endolysin	lysis
UHGV-0090206_36	UniRef90	UniRef90_R5WS78	Peptidase_M15_3 domain-containing protein	NA
UHGV-0090206_36	eggNOG-mapper	1501391.LG35_04555	Peptidase M15	NA
UHGV-0090206_36	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0090206_36	COG	COG3108	NA	NA
UHGV-0090206_36	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0090206_37	eggNOG-mapper	457424.BFAG_02413	NA	NA
UHGV-0090206_37	Structural annotation	PF10043, NF008028, COG5544	NA	NA
UHGV-0090206_38	PHROG	phrog_26448	NA	unknown function
UHGV-0090206_38	eggNOG-mapper	742725.HMPREF9450_00898	NA	NA
UHGV-0090206_38	Pfam	PF20647	NA	DUF6808
UHGV-0090206_38	Structural annotation	PF20647	NA	NA
UHGV-0090206_39	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0090206_39	PHROG	phrog_1	integrase	integration and excision
UHGV-0090206_39	UniRef90	UniRef90_UPI0019687BCE	tyrosine-type recombinase/integrase	NA
UHGV-0090206_39	eggNOG-mapper	679935.Alfi_3042	Belongs to the 'phage' integrase family	NA
UHGV-0090206_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0090206_39	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0090206_43	PHROG	phrog_21498	NA	unknown function
UHGV-0090206_43	UniRef90	UniRef90_A0A2N6Q6T2	Chromosome partitioning protein ParB	NA
UHGV-0090206_43	eggNOG-mapper	445970.ALIPUT_01611	DNA binding	NA
UHGV-0090206_43	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0090206_43	Structural annotation	PF05869, TIGR01712	NA	NA