UHGV-0090222

Genome information

vOTU vOTU-041981

Genome length 22,886 bps

CDS count 37

Completeness 63.50% (medium-quality)

geNomad score 0.9664

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090222
vOTU ID	vOTU-041981
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_190328
BioSample	SAMEA3449182
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9664
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.01
Jumbo phage	No

Genome content
Genome length	22,886 bps
GC content	55.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	86.75%
Average CDS length	543.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090222_1	KOfam	K14059	int; integrase	NA
UHGV-0090222_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0090222_1	UniRef90	UniRef90_A0A3D2G173	Tyr recombinase domain-containing protein	NA
UHGV-0090222_1	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0090222_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0090222_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0090222_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0090222_2	PHROG	phrog_3989	NA	unknown function
UHGV-0090222_2	UniRef90	UniRef90_A0A1Y3SK29	NAD-dependent DNA ligase	NA
UHGV-0090222_2	eggNOG-mapper	755731.Clo1100_2167	twin BRCT domain	NA
UHGV-0090222_2	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0090222_2	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0090222_2	Structural annotation	PF00533, NF004844	NA	NA
UHGV-0090222_3	UniRef90	UniRef90_A0A1Y3RHJ6	HTH cro/C1-type domain-containing protein	NA
UHGV-0090222_3	eggNOG-mapper	397291.C804_05804	TRANSCRIPTIONal	NA
UHGV-0090222_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0090222_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0090222_3	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0090222_5	UniRef90	UniRef90_UPI001F3372B8	helix-turn-helix domain-containing protein	NA
UHGV-0090222_5	eggNOG-mapper	397291.C804_05804	TRANSCRIPTIONal	NA
UHGV-0090222_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0090222_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0090222_7	PHROG	phrog_3306	NA	unknown function
UHGV-0090222_7	UniRef90	UniRef90_UPI001031F251	NA	NA
UHGV-0090222_7	eggNOG-mapper	469617.FUAG_01932	NA	NA
UHGV-0090222_7	AcrCatalog	cluster_5078	NA	NA
UHGV-0090222_7	Pfam	PF19670	NA	DUF6173
UHGV-0090222_7	Structural annotation	PF19670	NA	NA
UHGV-0090222_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0090222_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0090222_8	UniRef90	UniRef90_A0A8J6JJS4	Helix-turn-helix transcriptional regulator	NA
UHGV-0090222_8	eggNOG-mapper	237609.PSAKL28_16870	transcriptional regulator	NA
UHGV-0090222_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0090222_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090222_8	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0090222_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090222_9	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0090222_10	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0090222_10	UniRef90	UniRef90_U2QJH6	DNA-binding helix-turn-helix protein	NA
UHGV-0090222_10	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0090222_10	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0090222_10	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0090222_10	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0090222_12	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0090222_12	UniRef90	UniRef90_UPI0002DD08A7	helix-turn-helix domain-containing protein	NA
UHGV-0090222_12	eggNOG-mapper	693746.OBV_19830	DnaD domain protein	NA
UHGV-0090222_12	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0090222_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0090222_12	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0090222_13	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0090222_13	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0090222_13	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0090222_13	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0090222_13	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0090222_13	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0090222_13	COG	COG0305	Replicative DNA helicase	NA
UHGV-0090222_13	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0090222_16	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0090222_16	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0090222_16	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0090222_16	eggNOG-mapper	693746.OBV_19850	Anion-transporting ATPase	NA
UHGV-0090222_16	Pfam	PF13614	AAA domain	AAA_31
UHGV-0090222_16	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0090222_16	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0090222_17	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0090222_17	PHROG	phrog_27290	NA	unknown function
UHGV-0090222_17	UniRef90	UniRef90_UPI001BB4839F	ParB N-terminal domain-containing protein	NA
UHGV-0090222_17	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0090222_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0090222_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0090222_17	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0090222_19	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-0090222_19	Pfam	PF04448	NA	DUF551
UHGV-0090222_19	Structural annotation	PF04448	NA	NA
UHGV-0090222_21	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0090222_21	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0090222_21	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0090222_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0090222_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0090222_21	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0090222_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0090222_25	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0090222_25	Structural annotation	PF21578	NA	NA
UHGV-0090222_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0090222_26	UniRef90	UniRef90_UPI001C022B94	HNH endonuclease	NA
UHGV-0090222_26	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0090222_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0090222_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0090222_26	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0090222_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0090222_28	UniRef90	UniRef90_UPI001BB47B37	P27 family phage terminase small subunit	NA
UHGV-0090222_28	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0090222_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0090222_28	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0090222_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0090222_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0090222_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0090222_29	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-0090222_29	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0090222_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0090222_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0090222_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0090222_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0090222_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0090222_30	UniRef90	UniRef90_UPI001958B72F	phage portal protein	NA
UHGV-0090222_30	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-0090222_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0090222_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0090222_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0090222_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0090222_31	PHROG	phrog_3896	NA	unknown function
UHGV-0090222_31	eggNOG-mapper	476272.RUMHYD_01985	NA	NA
UHGV-0090222_33	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0090222_33	UniRef90	UniRef90_C9KJA8	dUTP diphosphatase	NA
UHGV-0090222_33	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0090222_33	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0090222_33	Structural annotation	PF17375	NA	NA
UHGV-0090222_34	PHROG	phrog_16951	NA	unknown function
UHGV-0090222_34	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0090222_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0090222_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0090222_35	UniRef90	UniRef90_UPI000B37FFEF	phage major capsid protein	NA
UHGV-0090222_35	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0090222_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0090222_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0090222_35	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0090222_36	UniRef90	UniRef90_UPI001C018007	head-tail connector protein	NA
UHGV-0090222_36	eggNOG-mapper	693746.OBV_20060	NA	NA
UHGV-0090222_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0090222_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0090222_37	PHROG	phrog_29848	NA	unknown function
UHGV-0090222_37	eggNOG-mapper	742738.HMPREF9460_01370	NA	NA