UHGV-0090236

Genome information

Genome length 26,614 bps

CDS count 40

Completeness 78.44% (medium-quality)

geNomad score 0.9534

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090236
vOTU ID	vOTU-021769
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_170820
BioSample	SAMEA3136727
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9534
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.33
Jumbo phage	No

Genome content
Genome length	26,614 bps
GC content	43.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	92.78%
Average CDS length	621.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090236_1	PHROG	phrog_6616	tail protein	tail
UHGV-0090236_1	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0090236_1	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0090236_2	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0090236_3	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0090236_3	UniRef90	UniRef90_A0A174ZXN5	Phage-related minor tail protein	NA
UHGV-0090236_3	eggNOG-mapper	1151292.QEW_4525	nuclear chromosome segregation	NA
UHGV-0090236_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0090236_3	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0090236_3	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0090236_4	PHROG	phrog_706	NA	unknown function
UHGV-0090236_4	UniRef90	UniRef90_A0A175A387	Bacteriophage Gp15 protein	NA
UHGV-0090236_4	eggNOG-mapper	1134413.ANNK01000120_gene2016	Bacteriophage Gp15 protein	NA
UHGV-0090236_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0090236_4	Structural annotation	PF06854	NA	NA
UHGV-0090236_5	UniRef90	UniRef90_A0A143ZVS5	Cse1 domain-containing protein	NA
UHGV-0090236_5	Structural annotation	PF10666	NA	NA
UHGV-0090236_6	PHROG	phrog_820	major tail protein	tail
UHGV-0090236_6	eggNOG-mapper	1295642.H839_08339	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0090236_6	COG	COG5492	NA	NA
UHGV-0090236_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0090236_7	Structural annotation	PF12691	NA	NA
UHGV-0090236_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0090236_8	UniRef90	UniRef90_A0A174ZTE4	Minor capsid protein	NA
UHGV-0090236_8	eggNOG-mapper	997296.PB1_16189	Minor capsid protein	NA
UHGV-0090236_8	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0090236_8	Structural annotation	PF11114	NA	NA
UHGV-0090236_9	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0090236_9	UniRef90	UniRef90_A0A174ZXQ8	Minor capsid protein	NA
UHGV-0090236_9	eggNOG-mapper	1295642.H839_08324	Minor capsid protein	NA
UHGV-0090236_9	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0090236_9	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0090236_9	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0090236_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0090236_10	eggNOG-mapper	935836.JAEL01000086_gene50	NA	NA
UHGV-0090236_12	PHROG	phrog_422	major head protein	head and packaging
UHGV-0090236_12	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0090236_12	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0090236_12	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0090236_13	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0090236_13	eggNOG-mapper	1415775.U729_2604	NA	NA
UHGV-0090236_14	PHROG	phrog_30343	NA	unknown function
UHGV-0090236_14	eggNOG-mapper	411473.RUMCAL_00285	NA	NA
UHGV-0090236_14	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-0090236_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0090236_16	UniRef90	UniRef90_A0A174ZWV0	Phage minor capsid protein 2	NA
UHGV-0090236_16	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0090236_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0090236_16	COG	COG2369	NA	NA
UHGV-0090236_16	Structural annotation	PF06152	NA	NA
UHGV-0090236_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0090236_17	UniRef90	UniRef90_A0A174ZTD4	Phage portal protein, putative, A118 family	NA
UHGV-0090236_17	eggNOG-mapper	1134413.ANNK01000120_gene2031	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0090236_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0090236_17	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0090236_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0090236_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0090236_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0090236_18	UniRef90	UniRef90_A0A355JEL9	PBSX family phage terminase large subunit	NA
UHGV-0090236_18	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0090236_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0090236_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0090236_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0090236_18	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0090236_19	eggNOG-mapper	1160721.RBI_II00544	NA	NA
UHGV-0090236_19	Structural annotation	PF07141	NA	NA
UHGV-0090236_21	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0090236_21	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0090236_21	UniRef90	UniRef90_A0A174ZTH1	Transcription termination factor nusG	NA
UHGV-0090236_21	eggNOG-mapper	1123075.AUDP01000039_gene182	Participates in transcription elongation, termination and antitermination	NA
UHGV-0090236_21	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0090236_21	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0090236_21	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0090236_22	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0090236_22	UniRef90	UniRef90_R5GR06	PF11985 family protein	NA
UHGV-0090236_22	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-0090236_22	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0090236_22	Structural annotation	PF11985	NA	NA
UHGV-0090236_23	PHROG	phrog_25462	NA	unknown function
UHGV-0090236_23	UniRef90	UniRef90_A0A3C0QMV8	Type VI secretion protein	NA
UHGV-0090236_23	eggNOG-mapper	552398.HMPREF0866_03124	NA	NA
UHGV-0090236_23	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0090236_24	eggNOG-mapper	411473.RUMCAL_01917	NA	NA
UHGV-0090236_26	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0090236_26	UniRef90	UniRef90_A0A1M6MWL2	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0090236_26	eggNOG-mapper	1415774.U728_2928	Helix-turn-helix XRE-family like proteins	NA
UHGV-0090236_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090236_26	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0090236_27	UniRef90	UniRef90_A0A3D0M0J4	DNA-binding protein	NA
UHGV-0090236_27	eggNOG-mapper	411473.RUMCAL_01916	Mor transcription activator	NA
UHGV-0090236_27	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0090236_27	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0090236_28	PHROG	phrog_286	NA	unknown function
UHGV-0090236_28	UniRef90	UniRef90_A0A6N8H086	Regulatory protein GemA	NA
UHGV-0090236_28	eggNOG-mapper	411473.RUMCAL_01915	NA	NA
UHGV-0090236_28	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0090236_28	Structural annotation	PF06252	NA	NA
UHGV-0090236_29	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-0090236_29	AcrCatalog	cluster_71843	NA	NA
UHGV-0090236_30	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0090236_30	UniRef90	UniRef90_A0A017RV38	SpoVT-AbrB domain-containing protein	NA
UHGV-0090236_30	eggNOG-mapper	1160721.RBI_II00552	SpoVT / AbrB like domain	NA
UHGV-0090236_30	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0090236_30	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0090236_33	PHROG	phrog_4292	NA	unknown function
UHGV-0090236_33	eggNOG-mapper	645991.Sgly_0752	NA	NA
UHGV-0090236_34	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-0090236_34	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0090236_34	UniRef90	UniRef90_A0A175A3H1	AAA domain-containing protein	NA
UHGV-0090236_34	eggNOG-mapper	411473.RUMCAL_01909	AAA domain	NA
UHGV-0090236_34	Pfam	PF13401	AAA domain	AAA_22
UHGV-0090236_34	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0090236_34	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0090236_35	PHROG	phrog_310	transposase	integration and excision
UHGV-0090236_35	UniRef90	UniRef90_A0A174ZTH8	Integrase core domain	NA
UHGV-0090236_35	eggNOG-mapper	1160721.RBI_II00555	Mu transposase, C-terminal	NA
UHGV-0090236_35	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0090236_35	Pfam	PF00665	Integrase core domain	rve
UHGV-0090236_35	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0090236_35	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0090236_35	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0090236_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0090236_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0090236_38	UniRef90	UniRef90_A0A174ZWN9	Transcriptional regulator, y4mF family	NA
UHGV-0090236_38	eggNOG-mapper	657322.FPR_24330	DNA-binding helix-turn-helix protein	NA
UHGV-0090236_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090236_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0090236_38	Structural annotation	PF01381, NF041575, COG1396	NA	NA
UHGV-0090236_39	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0090236_39	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0090236_39	UniRef90	UniRef90_A0A6N4APD4	HTH cro/C1-type domain-containing protein	NA
UHGV-0090236_39	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0090236_39	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0090236_39	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0090236_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0090236_39	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0090236_40	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0090236_40	UniRef90	UniRef90_A0A174ZSI5	Phage minor capsid protein 2	NA
UHGV-0090236_40	eggNOG-mapper	86416.Clopa_3380	Phage minor capsid protein 2	NA
UHGV-0090236_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0090236_40	COG	COG2369	NA	NA