UHGV-0090282

Genome information

Genome length 31,881 bps

CDS count 47

Completeness 83.71% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090282
vOTU ID	vOTU-027405
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_173707
BioSample	SAMEA3136643
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.58
Jumbo phage	No

Genome content
Genome length	31,881 bps
GC content	41.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.87%
Average CDS length	633.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090282_1	KOfam	K14059	int; integrase	NA
UHGV-0090282_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0090282_1	UniRef90	UniRef90_A0A373MXN6	Site-specific integrase	NA
UHGV-0090282_1	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0090282_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0090282_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0090282_1	Structural annotation	PF14659, PF12286, MF_01808, NF007246, COG4973	NA	NA
UHGV-0090282_2	PHROG	phrog_4431	NA	unknown function
UHGV-0090282_2	UniRef90	UniRef90_UPI001CD27D14	NA	NA
UHGV-0090282_2	eggNOG-mapper	1158602.I590_00688	Short C-terminal domain	NA
UHGV-0090282_3	PHROG	phrog_87	metallo-protease	other
UHGV-0090282_3	UniRef90	UniRef90_A0A415UM51	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0090282_3	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-0090282_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0090282_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0090282_3	Structural annotation	PF06114, COG3800	NA	NA
UHGV-0090282_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0090282_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0090282_4	UniRef90	UniRef90_A0A1Q6J9F6	HTH cro/C1-type domain-containing protein	NA
UHGV-0090282_4	eggNOG-mapper	658655.HMPREF0988_02594	Helix-turn-helix	NA
UHGV-0090282_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090282_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0090282_4	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0090282_5	UniRef90	UniRef90_UPI001B3C87CA	XRE family transcriptional regulator	NA
UHGV-0090282_5	eggNOG-mapper	1321814.HMPREF9089_00909	Helix-turn-helix domain of resolvase	NA
UHGV-0090282_5	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0090282_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0090282_6	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0090282_6	UniRef90	UniRef90_A0A564SBT3	Phage antirepressor protein KilAC domain protein	NA
UHGV-0090282_6	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0090282_6	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0090282_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0090282_6	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0090282_6	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0090282_8	Structural annotation	PF20037, COG3212	NA	NA
UHGV-0090282_9	UniRef90	UniRef90_A0A3E4LWT8	HTH psq-type domain-containing protein	NA
UHGV-0090282_9	eggNOG-mapper	1304866.K413DRAFT_1183	NA	NA
UHGV-0090282_9	Structural annotation	PF21291, MF_00535, NF007257, COG3655	NA	NA
UHGV-0090282_11	PHROG	phrog_674	NA	unknown function
UHGV-0090282_11	UniRef90	UniRef90_A0A373SW80	NA	NA
UHGV-0090282_11	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0090282_11	Pfam	PF07083	NA	DUF1351
UHGV-0090282_11	Structural annotation	PF07083	NA	NA
UHGV-0090282_12	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0090282_12	UniRef90	UniRef90_UPI001D0DD6FE	ERF family protein	NA
UHGV-0090282_12	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-0090282_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-0090282_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0090282_12	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0090282_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0090282_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0090282_13	UniRef90	UniRef90_A0A1Q6J9G6	Single-stranded DNA-binding protein	NA
UHGV-0090282_13	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-0090282_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0090282_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0090282_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0090282_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0090282_13	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0090282_14	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0090282_14	UniRef90	UniRef90_A0A1Q6J935	ERCC4 domain-containing protein	NA
UHGV-0090282_14	eggNOG-mapper	411460.RUMTOR_02068	NA	NA
UHGV-0090282_14	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0090282_14	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0090282_15	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0090282_15	PHROG	phrog_11992	NA	unknown function
UHGV-0090282_15	UniRef90	UniRef90_A0A373STX8	DNA primase	NA
UHGV-0090282_15	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0090282_15	PADLOC	drt-UG29	DRT	DRT
UHGV-0090282_15	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0090282_15	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0090282_15	Structural annotation	PF01807	NA	NA
UHGV-0090282_16	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0090282_16	UniRef90	UniRef90_A0A373SU28	NA	NA
UHGV-0090282_16	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0090282_16	Pfam	PF06048	NA	DUF927
UHGV-0090282_16	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0090282_16	COG	COG5519	NA	NA
UHGV-0090282_16	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0090282_17	PHROG	phrog_23374	NA	unknown function
UHGV-0090282_18	eggNOG-mapper	658655.HMPREF0988_02579	NA	NA
UHGV-0090282_19	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0090282_19	UniRef90	UniRef90_UPI001D01AC8C	class I SAM-dependent methyltransferase	NA
UHGV-0090282_19	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0090282_19	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0090282_19	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0090282_19	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0090282_22	PHROG	phrog_5051	NA	unknown function
UHGV-0090282_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0090282_26	UniRef90	UniRef90_A0A373STV4	NA	NA
UHGV-0090282_26	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0090282_26	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0090282_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0090282_26	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0090282_27	PHROG	phrog_8187	NA	unknown function
UHGV-0090282_27	eggNOG-mapper	411461.DORFOR_00752	NA	NA
UHGV-0090282_27	PADLOC	AbiN	AbiN	Abi
UHGV-0090282_28	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0090282_28	UniRef90	UniRef90_UPI00189A7385	phage terminase small subunit	NA
UHGV-0090282_28	eggNOG-mapper	999413.HMPREF1094_00222	DNA packaging	NA
UHGV-0090282_28	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0090282_28	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0090282_28	COG	COG5484	NA	NA
UHGV-0090282_28	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0090282_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0090282_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0090282_29	UniRef90	UniRef90_A0A3R6AA11	PBSX family phage terminase large subunit	NA
UHGV-0090282_29	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0090282_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0090282_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0090282_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0090282_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0090282_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0090282_30	UniRef90	UniRef90_A0A173TXV5	Phage portal protein, putative, A118 family	NA
UHGV-0090282_30	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0090282_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0090282_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0090282_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0090282_31	UniRef90	UniRef90_UPI0018AA9658	phage minor capsid protein	NA
UHGV-0090282_31	eggNOG-mapper	411461.DORFOR_00748	NA	NA
UHGV-0090282_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0090282_31	COG	COG2369	NA	NA
UHGV-0090282_31	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0090282_32	eggNOG-mapper	742765.HMPREF9457_02124	NA	NA
UHGV-0090282_33	KOfam	K07584	NA	NA
UHGV-0090282_33	PHROG	phrog_4478	peptidase	other
UHGV-0090282_33	UniRef90	UniRef90_UPI001D015AF1	ribosomal-processing cysteine protease Prp	NA
UHGV-0090282_33	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-0090282_33	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0090282_33	COG	COG2868	NA	NA
UHGV-0090282_33	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0090282_34	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0090282_34	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-0090282_34	AcrCatalog	cluster_74817	NA	NA
UHGV-0090282_34	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0090282_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0090282_35	UniRef90	UniRef90_A0A173TT07	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0090282_35	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0090282_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0090282_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0090282_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0090282_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0090282_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0090282_36	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-0090282_37	PHROG	phrog_3366	NA	unknown function
UHGV-0090282_37	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-0090282_37	Pfam	PF20536	NA	DUF6751
UHGV-0090282_37	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0090282_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0090282_38	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0090282_38	eggNOG-mapper	411462.DORLON_00783	NA	NA
UHGV-0090282_38	Structural annotation	PF11114	NA	NA
UHGV-0090282_39	PHROG	phrog_3266	tail completion	connector
UHGV-0090282_39	eggNOG-mapper	411461.DORFOR_00740	NA	NA
UHGV-0090282_39	Structural annotation	PF12691	NA	NA
UHGV-0090282_40	PHROG	phrog_3099	NA	unknown function
UHGV-0090282_40	eggNOG-mapper	411462.DORLON_00781	NA	NA
UHGV-0090282_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0090282_41	PHROG	phrog_4450	NA	unknown function
UHGV-0090282_41	eggNOG-mapper	411461.DORFOR_00738	NA	NA
UHGV-0090282_41	Pfam	PF20378	NA	DUF6673
UHGV-0090282_41	Structural annotation	PF20378	NA	NA
UHGV-0090282_42	PHROG	phrog_706	NA	unknown function
UHGV-0090282_42	UniRef90	UniRef90_A0A173TSE6	Bacteriophage Gp15 protein	NA
UHGV-0090282_42	eggNOG-mapper	411462.DORLON_00779	COG NOG24969 non supervised orthologous group	NA
UHGV-0090282_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0090282_42	Structural annotation	PF06854	NA	NA
UHGV-0090282_43	PHROG	phrog_5602	NA	unknown function
UHGV-0090282_43	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0090282_43	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0090282_44	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0090282_44	UniRef90	UniRef90_A0A173TTL9	Phage-related protein	NA
UHGV-0090282_44	eggNOG-mapper	411461.DORFOR_00735	nuclear chromosome segregation	NA
UHGV-0090282_44	COG	COG1511	NA	NA
UHGV-0090282_44	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0090282_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0090282_45	UniRef90	UniRef90_UPI00156E3DDD	phage tail protein	NA
UHGV-0090282_45	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-0090282_45	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0090282_46	PHROG	phrog_538	minor tail protein	tail
UHGV-0090282_46	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0090282_46	eggNOG-mapper	411460.RUMTOR_02096	NA	NA
UHGV-0090282_46	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0090282_46	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0090282_47	PHROG	phrog_9994	NA	unknown function
UHGV-0090282_47	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0090282_47	eggNOG-mapper	742765.HMPREF9457_03373	NA	NA
UHGV-0090282_47	Structural annotation	PF20747	NA	NA