UHGV-0090297

Genome information

Genome length 37,958 bps

CDS count 64

Completeness 70.74% (medium-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090297
vOTU ID	vOTU-036584
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_168584
BioSample	SAMEA3136736
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.67
Jumbo phage	No

Genome content
Genome length	37,958 bps
GC content	37.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	94.60%
Average CDS length	565.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090297_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0090297_1	PHROG	phrog_435	endolysin	lysis
UHGV-0090297_1	UniRef90	UniRef90_A0A1C6FU16	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0090297_1	eggNOG-mapper	272563.CD630_09720	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0090297_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0090297_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0090297_1	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0090297_2	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0090297_3	PHROG	phrog_37799	NA	unknown function
UHGV-0090297_3	UniRef90	UniRef90_R6NA79	Toxin secretion/phage lysis holin	NA
UHGV-0090297_3	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0090297_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0090297_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0090297_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0090297_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0090297_4	KOfam	K24248	EMID1; EMI domain-containing protein 1	NA
UHGV-0090297_4	PHROG	phrog_819	tail protein	tail
UHGV-0090297_4	eggNOG-mapper	1536769.P40081_01140	NA	NA
UHGV-0090297_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0090297_5	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0090297_7	UniRef90	UniRef90_R6MQV2	Tail Collar domain protein	NA
UHGV-0090297_7	Structural annotation	PF01696, NF000420, COG3420	NA	NA
UHGV-0090297_9	Structural annotation	PF09144, NF038393	NA	NA
UHGV-0090297_12	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0090297_12	eggNOG-mapper	1449126.JQKL01000002_gene1688	NA	NA
UHGV-0090297_13	Structural annotation	PF20387	NA	NA
UHGV-0090297_15	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0090297_15	UniRef90	UniRef90_A0A355JD53	Phage major capsid protein	NA
UHGV-0090297_15	eggNOG-mapper	588581.Cpap_1528	NA	NA
UHGV-0090297_15	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0090297_15	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0090297_17	PHROG	phrog_156	portal protein	head and packaging
UHGV-0090297_17	eggNOG-mapper	588581.Cpap_1526	NA	NA
UHGV-0090297_17	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0090297_19	UniRef90	UniRef90_A0A7X6VKT0	C2H2-type domain-containing protein	NA
UHGV-0090297_19	Structural annotation	PF21169	NA	NA
UHGV-0090297_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0090297_20	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0090297_20	UniRef90	UniRef90_A0A355JD48	Terminase_3 domain-containing protein	NA
UHGV-0090297_20	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0090297_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0090297_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0090297_20	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0090297_21	eggNOG-mapper	1449126.JQKL01000046_gene2071	NA	NA
UHGV-0090297_21	Structural annotation	PF06056, COG2963	NA	NA
UHGV-0090297_24	eggNOG-mapper	1095750.HMPREF9970_2261	NA	NA
UHGV-0090297_24	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0090297_29	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0090297_29	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0090297_29	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0090297_30	eggNOG-mapper	1235802.C823_04654	NA	NA
UHGV-0090297_33	PHROG	phrog_8684	NA	unknown function
UHGV-0090297_33	UniRef90	UniRef90_A0A1C5RI52	YopX protein	NA
UHGV-0090297_33	eggNOG-mapper	1235799.C818_02660	YopX protein	NA
UHGV-0090297_33	Pfam	PF09643	YopX protein	YopX
UHGV-0090297_33	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0090297_33	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0090297_34	PHROG	phrog_6802	NA	unknown function
UHGV-0090297_34	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-0090297_35	PHROG	phrog_419	NA	unknown function
UHGV-0090297_35	UniRef90	UniRef90_UPI001CC11C4F	PGDYG domain-containing protein	NA
UHGV-0090297_35	eggNOG-mapper	1134413.ANNK01000120_gene2032	NA	NA
UHGV-0090297_35	Structural annotation	PF14083	NA	NA
UHGV-0090297_36	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0090297_36	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0090297_36	UniRef90	UniRef90_A0A1C5STJ7	MazG domain-containing protein	NA
UHGV-0090297_36	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0090297_36	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0090297_36	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0090297_36	Structural annotation	PF14354, COG3478	NA	NA
UHGV-0090297_37	eggNOG-mapper	1118055.CAGU01000029_gene22	NA	NA
UHGV-0090297_40	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0090297_40	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0090297_40	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0090297_41	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0090297_41	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0090297_41	UniRef90	UniRef90_UPI00137AD09D	NA	NA
UHGV-0090297_41	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0090297_41	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0090297_41	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0090297_41	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0090297_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0090297_41	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0090297_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0090297_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0090297_42	UniRef90	UniRef90_R6M3F2	Single-stranded DNA-binding protein	NA
UHGV-0090297_42	eggNOG-mapper	394503.Ccel_0056	Single-stranded DNA-binding protein	NA
UHGV-0090297_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0090297_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0090297_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0090297_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0090297_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0090297_44	PHROG	phrog_398	NA	unknown function
UHGV-0090297_44	UniRef90	UniRef90_UPI00137A6F13	putative HNHc nuclease	NA
UHGV-0090297_44	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0090297_44	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0090297_44	Structural annotation	PF16784	NA	NA
UHGV-0090297_45	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0090297_45	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0090297_45	UniRef90	UniRef90_A0A7X8XIL0	MBL fold metallo-hydrolase	NA
UHGV-0090297_45	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0090297_45	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0090297_45	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0090297_45	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0090297_46	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0090297_46	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0090297_46	UniRef90	UniRef90_UPI001D034282	recombinase RecT	NA
UHGV-0090297_46	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0090297_46	Pfam	PF03837	RecT family	RecT
UHGV-0090297_46	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0090297_46	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0090297_46	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0090297_47	PHROG	phrog_674	NA	unknown function
UHGV-0090297_47	UniRef90	UniRef90_A0A416D4U8	NA	NA
UHGV-0090297_47	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0090297_47	Pfam	PF07083	NA	DUF1351
UHGV-0090297_47	Structural annotation	PF07083	NA	NA
UHGV-0090297_48	Structural annotation	PF09943	NA	NA
UHGV-0090297_49	PHROG	phrog_1029	NA	unknown function
UHGV-0090297_49	UniRef90	UniRef90_M1QIB9	Phage-related protein	NA
UHGV-0090297_49	eggNOG-mapper	1078085.HMPREF1210_01165	NA	NA
UHGV-0090297_49	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0090297_50	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0090297_50	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0090297_50	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0090297_51	Structural annotation	PF17574	NA	NA
UHGV-0090297_52	Structural annotation	PF10922	NA	NA
UHGV-0090297_57	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0090297_57	UniRef90	UniRef90_A0A373VPI4	HTH cro/C1-type domain-containing protein	NA
UHGV-0090297_57	Pfam	PF05339	NA	DUF739
UHGV-0090297_57	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0090297_58	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0090297_58	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0090297_58	UniRef90	UniRef90_UPI0013795F20	helix-turn-helix domain-containing protein	NA
UHGV-0090297_58	eggNOG-mapper	320839.Q4ZCJ1_9CAUD	sequence-specific DNA binding	NA
UHGV-0090297_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090297_58	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0090297_58	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0090297_60	UniRef90	UniRef90_R6MHD2	WGS project CABT00000000 data contig 2.20	NA
UHGV-0090297_62	KOfam	K14059	int; integrase	NA
UHGV-0090297_62	PHROG	phrog_1	integrase	integration and excision
UHGV-0090297_62	UniRef90	UniRef90_R6MY37	Putative integrase	NA
UHGV-0090297_62	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0090297_62	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0090297_62	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0090297_62	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0090297_62	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0090297_63	eggNOG-mapper	936596.HMPREF1495_2378	NA	NA
UHGV-0090297_64	UniRef90	UniRef90_R6MXZ0	PMT_2 domain-containing protein	NA
UHGV-0090297_64	eggNOG-mapper	742767.HMPREF9456_00054	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family	NA
UHGV-0090297_64	Pfam	PF13231	Dolichyl-phosphate-mannose-protein mannosyltransferase	PMT_2
UHGV-0090297_64	COG	COG1807	PMT family glycosyltransferase ArnT/Agl22, involved in glycosylation of proteins and lipid IVA	NA