UHGV-0090459

Genome information

Genome length 36,345 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090459
vOTU ID	vOTU-066433
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_171664
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.04
Jumbo phage	No

Genome content
Genome length	36,345 bps
GC content	27.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	91.55%
Average CDS length	530.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090459_1	KOfam	K14059	int; integrase	NA
UHGV-0090459_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0090459_1	UniRef90	UniRef90_R6Z669	Integrase family protein	NA
UHGV-0090459_1	eggNOG-mapper	760568.Desku_1398	Belongs to the 'phage' integrase family	NA
UHGV-0090459_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0090459_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0090459_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0090459_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0090459_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0090459_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0090459_2	UniRef90	UniRef90_A0A3E2XC24	Peptidase_S24 domain-containing protein	NA
UHGV-0090459_2	eggNOG-mapper	1384057.CD33_13940	Peptidase S24-like	NA
UHGV-0090459_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0090459_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0090459_3	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0090459_3	UniRef90	UniRef90_R6N5V5	HTH cro/C1-type domain-containing protein	NA
UHGV-0090459_3	eggNOG-mapper	1280.SAXN108_1969	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0090459_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0090459_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0090459_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0090459_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0090459_9	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0090459_9	UniRef90	UniRef90_UPI0003746119	siphovirus Gp157 family protein	NA
UHGV-0090459_9	eggNOG-mapper	1121091.AUMP01000003_gene2548	Siphovirus Gp157	NA
UHGV-0090459_9	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0090459_9	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0090459_10	PHROG	phrog_14970	NA	unknown function
UHGV-0090459_10	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-0090459_10	eggNOG-mapper	748727.CLJU_c18560	double-strand break repair protein	NA
UHGV-0090459_10	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0090459_10	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0090459_10	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0090459_11	PHROG	phrog_1389	NA	unknown function
UHGV-0090459_11	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0090459_11	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0090459_12	PHROG	phrog_7566	NA	unknown function
UHGV-0090459_12	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-0090459_13	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0090459_13	UniRef90	UniRef90_A0A133CKH9	Helix-turn-helix domain-containing protein	NA
UHGV-0090459_13	eggNOG-mapper	1033743.CAES01000078_gene3729	DnaD domain protein	NA
UHGV-0090459_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0090459_13	Structural annotation	PF04492, MF_01911, TIGR01610, COG3355	NA	NA
UHGV-0090459_14	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0090459_14	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0090459_14	UniRef90	UniRef90_R5ZPV6	DNA helicase	NA
UHGV-0090459_14	eggNOG-mapper	1262915.BN574_01082	Participates in initiation and elongation during chromosome replication	NA
UHGV-0090459_14	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0090459_14	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0090459_14	COG	COG0305	Replicative DNA helicase	NA
UHGV-0090459_14	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0090459_18	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0090459_18	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-0090459_18	eggNOG-mapper	879308.HMPREF9130_0415	NA	NA
UHGV-0090459_18	Pfam	PF06356	NA	DUF1064
UHGV-0090459_18	Structural annotation	PF06356	NA	NA
UHGV-0090459_22	PHROG	phrog_98	NA	unknown function
UHGV-0090459_22	Pfam	PF09643	YopX protein	YopX
UHGV-0090459_23	Pfam	PF09643	YopX protein	YopX
UHGV-0090459_23	Structural annotation	TIGR01671	NA	NA
UHGV-0090459_26	Structural annotation	PF01096	NA	NA
UHGV-0090459_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0090459_31	eggNOG-mapper	1347392.CCEZ01000005_gene1225	NA	NA
UHGV-0090459_31	Structural annotation	PF02996	NA	NA
UHGV-0090459_32	PHROG	phrog_774	NA	unknown function
UHGV-0090459_32	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0090459_36	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0090459_36	UniRef90	UniRef90_UPI001A9BCC34	helix-turn-helix domain-containing protein	NA
UHGV-0090459_36	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-0090459_36	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0090459_36	Structural annotation	PF07141	NA	NA
UHGV-0090459_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0090459_37	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0090459_37	UniRef90	UniRef90_A0A416VUT0	PBSX family phage terminase large subunit	NA
UHGV-0090459_37	eggNOG-mapper	411460.RUMTOR_02085	NA	NA
UHGV-0090459_37	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0090459_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0090459_37	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0090459_38	PHROG	phrog_533	portal protein	head and packaging
UHGV-0090459_38	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-0090459_38	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0090459_38	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0090459_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0090459_39	UniRef90	UniRef90_R5YW81	Minor capsid 2 protein	NA
UHGV-0090459_39	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0090459_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0090459_39	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0090459_39	COG	COG2369	NA	NA
UHGV-0090459_39	Structural annotation	PF06152	NA	NA
UHGV-0090459_40	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0090459_40	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-0090459_40	eggNOG-mapper	862517.HMPREF9225_1649	COG NOG36366 non supervised orthologous group	NA
UHGV-0090459_40	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0090459_40	Structural annotation	PF06810	NA	NA
UHGV-0090459_41	PHROG	phrog_422	major head protein	head and packaging
UHGV-0090459_41	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-0090459_41	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0090459_41	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0090459_43	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0090459_43	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0090459_44	Pfam	PF20536	NA	DUF6751
UHGV-0090459_44	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0090459_45	UniRef90	UniRef90_R5YSS3	Minor capsid	NA
UHGV-0090459_45	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0090459_45	Structural annotation	PF11114	NA	NA
UHGV-0090459_46	PHROG	phrog_3266	tail completion	connector
UHGV-0090459_46	Structural annotation	PF12691	NA	NA
UHGV-0090459_47	PHROG	phrog_3099	NA	unknown function
UHGV-0090459_47	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0090459_47	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0090459_49	PHROG	phrog_706	NA	unknown function
UHGV-0090459_49	UniRef90	UniRef90_R5ZNB7	Putative phage gp15 protein	NA
UHGV-0090459_49	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0090459_49	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0090459_49	Structural annotation	PF06854	NA	NA
UHGV-0090459_50	PHROG	phrog_806	NA	unknown function
UHGV-0090459_50	UniRef90	UniRef90_R5YQM2	NA	NA
UHGV-0090459_50	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0090459_50	Pfam	PF11611	NA	DUF4352
UHGV-0090459_50	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0090459_51	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0090459_51	UniRef90	UniRef90_C9B746	TMP_3 domain-containing protein	NA
UHGV-0090459_51	eggNOG-mapper	1201292.DR75_1503	Phage tail tape measure protein, TP901 family	NA
UHGV-0090459_51	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0090459_51	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0090459_51	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0090459_52	eggNOG-mapper	1120998.AUFC01000030_gene2248	NA	NA
UHGV-0090459_54	Structural annotation	PF03906	NA	NA
UHGV-0090459_57	PHROG	phrog_17180	NA	unknown function
UHGV-0090459_57	eggNOG-mapper	457424.BFAG_02437	NA	NA
UHGV-0090459_58	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0090459_59	UniRef90	UniRef90_A0A1Q6LC62	SH3b domain-containing protein	NA
UHGV-0090459_59	eggNOG-mapper	717606.PaecuDRAFT_1762	Papain-like cysteine protease AvrRpt2	NA
UHGV-0090459_59	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0090459_59	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0090459_59	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0090459_59	Structural annotation	PF03412, PF08239, NF040678, COG3807, COG3271	NA	NA
UHGV-0090459_60	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0090459_60	UniRef90	UniRef90_UPI001D10AAAA	AP2 domain-containing protein	NA
UHGV-0090459_60	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-0090459_62	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0090459_62	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0090459_62	UniRef90	UniRef90_R6N2B0	Transcriptional regulator	NA
UHGV-0090459_62	eggNOG-mapper	148814.JI66_02985	Helix-turn-helix XRE-family like proteins	NA
UHGV-0090459_62	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0090459_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090459_62	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0090459_62	Structural annotation	PF01381, NF041951, COG1396	NA	NA