UHGV-0090532

Genome information

vOTU vOTU-042067

Genome length 27,725 bps

CDS count 47

Completeness 75.64% (medium-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090532
vOTU ID	vOTU-042067
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_200263
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.42
Jumbo phage	No

Genome content
Genome length	27,725 bps
GC content	44.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	89.63%
Average CDS length	534.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090532_1	PHROG	phrog_16802	NA	unknown function
UHGV-0090532_1	UniRef90	UniRef90_UPI001D04A6A6	phage holin family protein	NA
UHGV-0090532_1	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0090532_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0090532_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0090532_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0090532_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0090532_2	PHROG	phrog_3088	amidase	lysis
UHGV-0090532_2	UniRef90	UniRef90_A0A4P6M401	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-0090532_2	eggNOG-mapper	33035.JPJF01000043_gene994	Glycosyl hydrolases family 25	NA
UHGV-0090532_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0090532_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0090532_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0090532_2	Structural annotation	PF01510, PF01471, MF_04111, NF008758, TIGR02869, COG5632, COG3409	NA	NA
UHGV-0090532_3	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0090532_3	UniRef90	UniRef90_UPI0011DE0CA7	Rha family transcriptional regulator	NA
UHGV-0090532_3	eggNOG-mapper	33035.JPJF01000043_gene993	NA	NA
UHGV-0090532_3	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0090532_3	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0090532_3	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0090532_3	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0090532_4	eggNOG-mapper	33035.JPJF01000043_gene976	NA	NA
UHGV-0090532_6	KOfam	K14059	int; integrase	NA
UHGV-0090532_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0090532_6	UniRef90	UniRef90_A0A7G5N2Y9	Site-specific integrase	NA
UHGV-0090532_6	eggNOG-mapper	33035.JPJF01000071_gene4457	Phage integrase family	NA
UHGV-0090532_6	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0090532_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0090532_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0090532_6	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0090532_7	eggNOG-mapper	742742.HMPREF9452_00922	sh3 domain protein	NA
UHGV-0090532_7	COG	COG3103	NA	NA
UHGV-0090532_8	PHROG	phrog_87	metallo-protease	other
UHGV-0090532_8	UniRef90	UniRef90_A0A7G5N2Y6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0090532_8	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0090532_8	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0090532_8	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0090532_8	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0090532_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0090532_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0090532_9	UniRef90	UniRef90_A0A7G5N2Y5	XRE family transcriptional regulator	NA
UHGV-0090532_9	eggNOG-mapper	1304866.K413DRAFT_3003	addiction module antidote protein HigA	NA
UHGV-0090532_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090532_9	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0090532_9	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0090532_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0090532_10	UniRef90	UniRef90_A0A1I5G6W9	Helix-turn-helix domain-containing protein	NA
UHGV-0090532_10	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0090532_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090532_10	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0090532_10	Structural annotation	PF01381, TIGR02607, COG1396	NA	NA
UHGV-0090532_12	PHROG	phrog_750	NA	unknown function
UHGV-0090532_12	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-0090532_12	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0090532_13	PHROG	phrog_36464	NA	unknown function
UHGV-0090532_13	UniRef90	UniRef90_R6QN85	50S ribosomal protein L11 domain protein	NA
UHGV-0090532_13	eggNOG-mapper	1235798.C817_05488	NA	NA
UHGV-0090532_13	Structural annotation	PF09035	NA	NA
UHGV-0090532_16	PHROG	phrog_34638	NA	unknown function
UHGV-0090532_16	Structural annotation	COG1965	NA	NA
UHGV-0090532_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0090532_18	eggNOG-mapper	1232452.BAIB02000007_gene1647	NA	NA
UHGV-0090532_18	Structural annotation	PF21578	NA	NA
UHGV-0090532_19	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0090532_19	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0090532_19	UniRef90	UniRef90_A0A4Q7PJQ5	RNase H superfamily protein	NA
UHGV-0090532_19	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0090532_19	Pfam	PF00075	RNase H	RNase_H
UHGV-0090532_19	COG	COG0328	Ribonuclease HI	NA
UHGV-0090532_19	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0090532_20	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0090532_21	PHROG	phrog_8470	NA	unknown function
UHGV-0090532_21	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0090532_21	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0090532_21	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0090532_21	Structural annotation	PF14284	NA	NA
UHGV-0090532_22	PHROG	phrog_15077	NA	unknown function
UHGV-0090532_22	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0090532_22	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0090532_22	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0090532_23	eggNOG-mapper	1298920.KI911353_gene4860	NA	NA
UHGV-0090532_25	eggNOG-mapper	1235798.C817_01884	NA	NA
UHGV-0090532_28	PHROG	phrog_7566	NA	unknown function
UHGV-0090532_28	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0090532_30	eggNOG-mapper	411468.CLOSCI_00568	NA	NA
UHGV-0090532_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0090532_32	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0090532_34	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0090532_34	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0090532_34	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0090532_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0090532_35	PHROG	phrog_1066	NA	unknown function
UHGV-0090532_35	eggNOG-mapper	318464.IO99_13770	NA	NA
UHGV-0090532_35	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0090532_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0090532_36	UniRef90	UniRef90_UPI00148AEB9A	terminase large subunit	NA
UHGV-0090532_36	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0090532_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0090532_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0090532_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0090532_36	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0090532_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-0090532_37	UniRef90	UniRef90_UPI00148B140C	phage portal protein	NA
UHGV-0090532_37	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0090532_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0090532_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0090532_37	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0090532_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0090532_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0090532_38	UniRef90	UniRef90_UPI00148AFF63	Clp protease ClpP	NA
UHGV-0090532_38	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-0090532_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0090532_38	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0090532_38	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0090532_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-0090532_39	UniRef90	UniRef90_UPI00148B248C	phage major capsid protein	NA
UHGV-0090532_39	eggNOG-mapper	1235793.C809_01920	Phage capsid family	NA
UHGV-0090532_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0090532_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0090532_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0090532_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0090532_40	PHROG	phrog_5223	neck protein	connector
UHGV-0090532_40	UniRef90	UniRef90_UPI0019613678	head-tail connector protein	NA
UHGV-0090532_40	eggNOG-mapper	573061.Clocel_2435	NA	NA
UHGV-0090532_41	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0090532_41	UniRef90	UniRef90_A0A2V2GTA0	Phage head-tail adapter protein	NA
UHGV-0090532_41	eggNOG-mapper	1280689.AUJC01000011_gene1524	NA	NA
UHGV-0090532_41	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0090532_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0090532_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0090532_42	UniRef90	UniRef90_UPI00148AE38B	HK97 gp10 family phage protein	NA
UHGV-0090532_42	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0090532_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0090532_42	Structural annotation	TIGR01725	NA	NA
UHGV-0090532_43	eggNOG-mapper	498761.HM1_2876	NA	NA
UHGV-0090532_43	Structural annotation	PF05657	NA	NA
UHGV-0090532_44	PHROG	phrog_88	major tail protein	tail
UHGV-0090532_44	UniRef90	UniRef90_UPI00148B0F18	major tail protein	NA
UHGV-0090532_44	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0090532_44	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0090532_44	COG	COG5492	NA	NA
UHGV-0090532_44	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0090532_45	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-0090532_45	Structural annotation	PF11836	NA	NA
UHGV-0090532_47	KOfam	K21024	bifA; c-di-GMP phosphodiesterase [EC:3.1.4.52]	NA
UHGV-0090532_47	PHROG	phrog_11823	NA	unknown function
UHGV-0090532_47	eggNOG-mapper	658655.HMPREF0988_00777	Putative diguanylate phosphodiesterase	NA
UHGV-0090532_47	Pfam	PF00563	EAL domain	EAL
UHGV-0090532_47	COG	COG2203	GAF domain	NA