UHGV-0090588

Genome information

Genome length 29,776 bps

CDS count 43

Completeness 63.98% (medium-quality)

geNomad score 0.9650

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090588
vOTU ID	vOTU-023120
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_174551
BioSample	SAMEA3136651
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9650
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.17
Jumbo phage	No

Genome content
Genome length	29,776 bps
GC content	46.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.18%
Average CDS length	647.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090588_2	PHROG	phrog_521	tail protein	tail
UHGV-0090588_2	UniRef90	UniRef90_A0A858BX30	YmfQ family protein	NA
UHGV-0090588_2	eggNOG-mapper	696281.Desru_1324	NA	NA
UHGV-0090588_2	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0090588_2	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0090588_2	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0090588_3	PHROG	phrog_6	baseplate protein	tail
UHGV-0090588_3	UniRef90	UniRef90_UPI000465AC97	baseplate J/gp47 family protein	NA
UHGV-0090588_3	eggNOG-mapper	1408823.AXUS01000024_gene2733	Baseplate J-like protein	NA
UHGV-0090588_3	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0090588_3	COG	COG3299	NA	NA
UHGV-0090588_3	Structural annotation	PF04865, PF21379, MF_04102, COG3299	NA	NA
UHGV-0090588_4	PHROG	phrog_120	baseplate protein	tail
UHGV-0090588_4	UniRef90	UniRef90_A0A316PHP4	NA	NA
UHGV-0090588_4	eggNOG-mapper	1582156.A0A0A8WFW6_9CAUD	lytic transglycosylase activity	NA
UHGV-0090588_4	Pfam	PF10934	NA	DUF2634
UHGV-0090588_4	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0090588_5	PHROG	phrog_579	NA	unknown function
UHGV-0090588_5	UniRef90	UniRef90_A0A316PDY3	Phage portal protein	NA
UHGV-0090588_5	eggNOG-mapper	861454.HMPREF9099_00622	NA	NA
UHGV-0090588_5	Pfam	PF10844	NA	DUF2577
UHGV-0090588_5	Structural annotation	PF10844	NA	NA
UHGV-0090588_6	PHROG	phrog_400	tail protein	tail
UHGV-0090588_6	UniRef90	UniRef90_A0A316PG95	Amidase_5 domain-containing protein	NA
UHGV-0090588_6	eggNOG-mapper	1029718.SFBM_0133	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0090588_6	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0090588_6	Structural annotation	PF14594, NF033848, NF033742, COG4379	NA	NA
UHGV-0090588_7	PHROG	phrog_380	endolysin	lysis
UHGV-0090588_7	UniRef90	UniRef90_A0A2K9P3V0	Peptidoglycan-binding LysM	NA
UHGV-0090588_7	eggNOG-mapper	1408823.AXUS01000024_gene2729	LysM domain	NA
UHGV-0090588_7	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0090588_8	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0090588_8	UniRef90	UniRef90_A0A1Q6LSE2	TMP_3 domain-containing protein	NA
UHGV-0090588_8	eggNOG-mapper	1120998.AUFC01000013_gene2971	tape measure	NA
UHGV-0090588_8	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0090588_8	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0090588_8	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0090588_8	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0090588_9	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0090588_9	UniRef90	UniRef90_A0A0K9GRF2	Phage portal protein	NA
UHGV-0090588_9	eggNOG-mapper	1195236.CTER_3995	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0090588_9	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0090588_9	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0090588_10	PHROG	phrog_365	tail protein	tail
UHGV-0090588_10	UniRef90	UniRef90_UPI0018AB5726	phage tail tube protein	NA
UHGV-0090588_10	eggNOG-mapper	642492.Clole_2749	Phage tail tube protein	NA
UHGV-0090588_10	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0090588_10	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0090588_11	PHROG	phrog_279	tail sheath	tail
UHGV-0090588_11	UniRef90	UniRef90_A0A316PDP6	Phage tail protein	NA
UHGV-0090588_11	eggNOG-mapper	742740.HMPREF9474_02347	Phage tail sheath C-terminal domain	NA
UHGV-0090588_11	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0090588_11	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0090588_11	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0090588_11	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0090588_12	PHROG	phrog_966	NA	unknown function
UHGV-0090588_13	PHROG	phrog_525	NA	unknown function
UHGV-0090588_13	eggNOG-mapper	536232.CLM_2653	NA	NA
UHGV-0090588_13	Pfam	PF20765	NA	DUF6838
UHGV-0090588_13	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0090588_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0090588_14	UniRef90	UniRef90_A0A4R1PUJ9	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-0090588_14	eggNOG-mapper	272563.CD630_09520	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0090588_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0090588_14	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0090588_15	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0090588_15	eggNOG-mapper	742740.HMPREF9474_02351	NA	NA
UHGV-0090588_15	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0090588_16	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0090588_16	eggNOG-mapper	861454.HMPREF9099_00611	NA	NA
UHGV-0090588_16	Structural annotation	PF05135	NA	NA
UHGV-0090588_17	PHROG	phrog_29	major head protein	head and packaging
UHGV-0090588_17	UniRef90	UniRef90_A0A2K9P3U0	Phage major capsid protein E	NA
UHGV-0090588_17	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0090588_17	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0090588_17	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0090588_18	PHROG	phrog_909	major head protein	head and packaging
UHGV-0090588_18	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0090588_18	eggNOG-mapper	1078085.HMPREF1210_01145	NA	NA
UHGV-0090588_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0090588_19	UniRef90	UniRef90_A0A410Q086	Phage scaffold protein	NA
UHGV-0090588_19	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-0090588_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0090588_19	Structural annotation	PF06810	NA	NA
UHGV-0090588_20	eggNOG-mapper	1514668.JOOA01000001_gene690	NA	NA
UHGV-0090588_21	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0090588_21	UniRef90	UniRef90_UPI001C00E771	minor capsid protein	NA
UHGV-0090588_21	eggNOG-mapper	1321779.HMPREF1984_01309	Phage Mu protein F like protein	NA
UHGV-0090588_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0090588_21	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0090588_21	COG	COG2369	NA	NA
UHGV-0090588_21	Structural annotation	PF04233, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0090588_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0090588_22	UniRef90	UniRef90_A0A259V0A1	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0090588_22	eggNOG-mapper	1121289.JHVL01000082_gene1210	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0090588_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0090588_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0090588_23	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0090588_23	UniRef90	UniRef90_A0A8H9QRT1	Phage terminase large subunit	NA
UHGV-0090588_23	eggNOG-mapper	357809.Cphy_2971	TIGRFAM Phage	NA
UHGV-0090588_23	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0090588_23	COG	COG5410	NA	NA
UHGV-0090588_23	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0090588_24	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0090588_24	UniRef90	UniRef90_A0A833CAS3	Helix-turn-helix domain-containing protein	NA
UHGV-0090588_24	eggNOG-mapper	742740.HMPREF9474_02359	transposase activity	NA
UHGV-0090588_24	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0090588_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0090588_25	UniRef90	UniRef90_UPI00046FEE02	NA	NA
UHGV-0090588_25	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0090588_25	Pfam	PF07374	NA	DUF1492
UHGV-0090588_25	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0090588_27	PHROG	phrog_31569	NA	unknown function
UHGV-0090588_28	PHROG	phrog_23707	NA	unknown function
UHGV-0090588_28	UniRef90	UniRef90_A7AY49	NA	NA
UHGV-0090588_28	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0090588_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0090588_32	UniRef90	UniRef90_N1ZC10	HTH cro/C1-type domain-containing protein	NA
UHGV-0090588_32	eggNOG-mapper	97138.C820_00783	Helix-turn-helix domain	NA
UHGV-0090588_33	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0090588_33	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0090588_33	Structural annotation	PF13058, PF02805, COG2856	NA	NA
UHGV-0090588_34	PHROG	phrog_1847	NA	unknown function
UHGV-0090588_34	UniRef90	UniRef90_A0A7U9D8Y1	T5orf172 domain-containing protein	NA
UHGV-0090588_34	eggNOG-mapper	445974.CLORAM_02968	T5orf172	NA
UHGV-0090588_34	Pfam	PF13250	NA	DUF4041
UHGV-0090588_34	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0090588_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0090588_34	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0090588_35	UniRef90	UniRef90_UPI001C00B95B	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0090588_35	eggNOG-mapper	858215.Thexy_1763	NA	NA
UHGV-0090588_35	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-0090588_36	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0090588_36	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0090588_36	UniRef90	UniRef90_A0A1G5S4B2	Helix-turn-helix	NA
UHGV-0090588_36	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-0090588_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090588_36	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0090588_37	UniRef90	UniRef90_A0A7C6J5M7	Preprotein translocase subunit SecB	NA
UHGV-0090588_37	eggNOG-mapper	1031288.AXAA01000014_gene407	Preprotein translocase subunit SecB	NA
UHGV-0090588_37	Structural annotation	PF02556, MF_00821, NF004392, COG1952	NA	NA
UHGV-0090588_38	eggNOG-mapper	742742.HMPREF9452_00448	NYN domain	NA
UHGV-0090588_38	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0090588_39	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0090588_39	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0090588_39	UniRef90	UniRef90_C9KLU5	Toxin-antitoxin system, toxin component, HicA family	NA
UHGV-0090588_39	eggNOG-mapper	641112.ACOK01000116_gene2618	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0090588_39	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0090588_39	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0090588_39	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0090588_40	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0090588_40	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0090588_40	UniRef90	UniRef90_UPI000B49C1EE	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0090588_40	eggNOG-mapper	138119.DSY3841	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0090588_40	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0090588_40	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0090588_40	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0090588_41	KOfam	K14059	int; integrase	NA
UHGV-0090588_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0090588_41	UniRef90	UniRef90_A0A136Q835	Site-specific recombinase, phage integrase family	NA
UHGV-0090588_41	eggNOG-mapper	1408306.JHXX01000001_gene2486	Phage integrase family	NA
UHGV-0090588_41	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0090588_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0090588_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0090588_41	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA