UHGV-0090627

Genome information

Genome length 29,926 bps

CDS count 48

Completeness 84.31% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090627
vOTU ID	vOTU-027168
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_187829
BioSample	SAMEA3449230
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.21
Jumbo phage	No

Genome content
Genome length	29,926 bps
GC content	43.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.78%
Average CDS length	582.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090627_1	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0090627_1	PHROG	phrog_11037	NA	unknown function
UHGV-0090627_1	UniRef90	UniRef90_A0A373N7H3	Peptidase M23	NA
UHGV-0090627_1	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0090627_1	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0090627_1	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0090627_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0090627_1	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0090627_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0090627_2	UniRef90	UniRef90_A0A8G1TKQ2	Prophage_tail domain-containing protein	NA
UHGV-0090627_2	eggNOG-mapper	33035.JPJF01000023_gene3230	Phage minor structural protein	NA
UHGV-0090627_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0090627_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0090627_2	COG	COG4926	Phage-related protein	NA
UHGV-0090627_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0090627_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0090627_3	UniRef90	UniRef90_UPI00164B9B8B	phage tail family protein	NA
UHGV-0090627_3	eggNOG-mapper	33035.JPJF01000023_gene3231	phage tail	NA
UHGV-0090627_3	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0090627_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0090627_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0090627_4	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0090627_4	UniRef90	UniRef90_A0A7G5N113	Phage tail tape measure protein	NA
UHGV-0090627_4	eggNOG-mapper	931626.Awo_c30950	Phage tail tape measure protein, TP901 family	NA
UHGV-0090627_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0090627_4	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0090627_4	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0090627_7	PHROG	phrog_88	major tail protein	tail
UHGV-0090627_7	UniRef90	UniRef90_A0A3E3JYD8	Phage tail protein	NA
UHGV-0090627_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0090627_7	COG	COG5492	NA	NA
UHGV-0090627_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0090627_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0090627_8	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0090627_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0090627_8	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0090627_9	PHROG	phrog_78	tail terminator	connector
UHGV-0090627_9	Structural annotation	PF05657	NA	NA
UHGV-0090627_10	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-0090627_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0090627_11	PHROG	phrog_749	NA	unknown function
UHGV-0090627_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0090627_12	UniRef90	UniRef90_A0A3E3JY53	Phage major capsid protein	NA
UHGV-0090627_12	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0090627_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0090627_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0090627_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0090627_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0090627_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0090627_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0090627_13	UniRef90	UniRef90_A0A3E3JYT5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0090627_13	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0090627_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0090627_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0090627_13	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0090627_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0090627_14	UniRef90	UniRef90_A0A3E3JY21	Phage portal protein	NA
UHGV-0090627_14	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0090627_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0090627_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0090627_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0090627_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0090627_15	UniRef90	UniRef90_A0A3E3JY25	Terminase large subunit	NA
UHGV-0090627_15	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0090627_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0090627_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0090627_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0090627_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0090627_16	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0090627_16	UniRef90	UniRef90_UPI001D067F64	P27 family phage terminase small subunit	NA
UHGV-0090627_16	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0090627_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0090627_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0090627_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0090627_17	UniRef90	UniRef90_A0A416MN03	Sigma70_r4 domain-containing protein	NA
UHGV-0090627_17	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0090627_17	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0090627_22	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0090627_22	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0090627_22	UniRef90	UniRef90_UPI001AA184DC	DNA adenine methylase	NA
UHGV-0090627_22	eggNOG-mapper	411468.CLOSCI_00302	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0090627_22	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0090627_22	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0090627_22	COG	COG0338	DNA-adenine methylase	NA
UHGV-0090627_22	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0090627_23	eggNOG-mapper	1304866.K413DRAFT_1210	NA	NA
UHGV-0090627_23	Structural annotation	NF041909	NA	NA
UHGV-0090627_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0090627_24	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0090627_24	UniRef90	UniRef90_C0BC27	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0090627_24	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0090627_24	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0090627_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0090627_24	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0090627_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0090627_24	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0090627_25	eggNOG-mapper	610130.Closa_1375	NA	NA
UHGV-0090627_28	UniRef90	UniRef90_A0A374DWN5	GNAT family N-acetyltransferase	NA
UHGV-0090627_28	Pfam	PF13508	Acetyltransferase (GNAT) domain	Acetyltransf_7
UHGV-0090627_28	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0090627_28	Structural annotation	PF13523, MF_02210, TIGR01575, COG1247	NA	NA
UHGV-0090627_31	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0090627_31	UniRef90	UniRef90_R9MLW8	HNHc domain-containing protein	NA
UHGV-0090627_31	eggNOG-mapper	1235799.C818_02662	HNH endonuclease	NA
UHGV-0090627_31	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0090627_31	Structural annotation	PF13392	NA	NA
UHGV-0090627_32	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0090627_32	eggNOG-mapper	1235799.C818_02661	NA	NA
UHGV-0090627_32	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0090627_33	Structural annotation	PF17400	NA	NA
UHGV-0090627_34	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0090627_34	PHROG	phrog_3502	NA	unknown function
UHGV-0090627_34	UniRef90	UniRef90_A0A0F0C7S4	LexA repressor	NA
UHGV-0090627_34	eggNOG-mapper	525256.HMPREF0091_10731	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0090627_34	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0090627_34	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0090627_34	Structural annotation	PF01726, MF_00732, TIGR02944, COG1321	NA	NA
UHGV-0090627_35	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0090627_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0090627_35	UniRef90	UniRef90_B0NA30	Site-specific recombinase, phage integrase family	NA
UHGV-0090627_35	eggNOG-mapper	411468.CLOSCI_00297	Belongs to the 'phage' integrase family	NA
UHGV-0090627_35	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0090627_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0090627_35	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0090627_35	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0090627_38	PHROG	phrog_7566	NA	unknown function
UHGV-0090627_38	eggNOG-mapper	411461.DORFOR_01145	NA	NA
UHGV-0090627_39	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0090627_39	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0090627_39	UniRef90	UniRef90_A0A8E3MXL0	RNase H type-1 domain-containing protein	NA
UHGV-0090627_39	eggNOG-mapper	1232453.BAIF02000027_gene4200	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0090627_39	Pfam	PF00075	RNase H	RNase_H
UHGV-0090627_39	COG	COG0328	Ribonuclease HI	NA
UHGV-0090627_40	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0090627_40	eggNOG-mapper	97139.C824_00041	NA	NA
UHGV-0090627_40	Structural annotation	PF01446	NA	NA
UHGV-0090627_42	UniRef90	UniRef90_A0A1L5F301	HTH cro/C1-type domain-containing protein	NA
UHGV-0090627_43	KOfam	K04892	KCND2, KV4.2; potassium voltage-gated channel Shal-related subfamily D member 2	NA
UHGV-0090627_43	PHROG	phrog_7872	NA	unknown function
UHGV-0090627_43	UniRef90	UniRef90_G5HEN0	Ion_trans domain-containing protein	NA
UHGV-0090627_43	eggNOG-mapper	742733.HMPREF9469_00903	Ion transport protein	NA
UHGV-0090627_43	Pfam	PF00520	Ion transport protein	Ion_trans
UHGV-0090627_43	COG	COG0569	Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain	NA
UHGV-0090627_43	Structural annotation	PF00520, NF040645	NA	NA
UHGV-0090627_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0090627_44	UniRef90	UniRef90_A0A8G1TI02	XRE family transcriptional regulator	NA
UHGV-0090627_44	eggNOG-mapper	1211844.CBLM010000016_gene1521	Helix-turn-helix XRE-family like proteins	NA
UHGV-0090627_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090627_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0090627_45	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0090627_45	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0090627_45	UniRef90	UniRef90_A0A0K9N6J2	Putative repressor	NA
UHGV-0090627_45	eggNOG-mapper	1232453.BAIF02000057_gene1123	sequence-specific DNA binding	NA
UHGV-0090627_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0090627_45	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0090627_45	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0090627_45	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0090627_46	eggNOG-mapper	1151292.QEW_0313	IrrE N-terminal-like domain	NA
UHGV-0090627_46	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0090627_46	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0090627_48	KOfam	K14059	int; integrase	NA
UHGV-0090627_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0090627_48	UniRef90	UniRef90_A0A3E2X1I2	Tyr recombinase domain-containing protein	NA
UHGV-0090627_48	eggNOG-mapper	1232453.BAIF02000110_gene768	Phage integrase family	NA
UHGV-0090627_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0090627_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0090627_48	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA